Browse Element(s) Details


Os.3496.1.S1_at

Description gb:AU090461
DB_XREF= gi:7608679
DB_XREF=AU090461
CLONE=C52458
TID=Os.3496.1
CNT=5
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.3496 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1211011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g12070Os.32667.1.S1_at11/111+6561499..6564942Glycosyl hydrolase family 9 protein, expressed
LOC_Os01g12070Os.32667.2.S1_x_at11/111+6561499..6564942Glycosyl hydrolase family 9 protein, expressed
LOC_Os01g12080Os.12263.1.S1_at11/111+6568846..6573967uncharacterized plant-specific domain TIGR01589 family protein, expressed
LOC_Os01g12090Os.3494.1.S1_at11/111+6580489..6583909expressed protein
LOC_Os01g12100OsAffx.22100.1.S1_x_at11/111+6584147..6584745expressed protein
LOC_Os01g12100Os.54460.1.A1_at1/111+6584147..6584745expressed protein
LOC_Os01g12110Os.3496.1.S1_at11/111+6587702..6588938expressed protein
LOC_Os01g12120NANA1+6603323..6604041hypothetical protein
LOC_Os01g12130Os.27838.1.S1_at11/111+6609156..6610707nodulin MtN3 family protein, putative, expressed
LOC_Os01g12140OsAffx.9910.1.S1_x_at11/111+6612205..6612570hypothetical protein
LOC_Os01g12150OsAffx.32171.1.S1_x_at11/111+6613534..6615625hypothetical protein
LOC_Os01g12150OsAffx.32171.2.S1_at7/111+6613534..6615625hypothetical protein
LOC_Os01g12150Os.49487.1.S1_at1/111+6613534..6615625hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.3496.1.S1_at--236--8191Chr01:6588424..6588448 (25 bp)
GGAAGAAGTCGTCTCTCGCCATCGT
LOC_Os01g12110
Os.3496.1.S1_at--963--10631Chr01:6588392..6588416 (25 bp)
TTCGCCGTCGAGATAACCGATGCTC
LOC_Os01g12110
Os.3496.1.S1_at--337--5971Chr01:6588179..6588203 (25 bp)
GAGAAGAACCAGGAGCTTGCTTGAT
LOC_Os01g12110
Os.3496.1.S1_at--1059--7471Chr01:6588101..6588125 (25 bp)
GTGTGTGCCAATCAATCAACTACTA
LOC_Os01g12110
Os.3496.1.S1_at--1146--10851Chr01:6588061..6588085 (25 bp)
TTGGCATCAGCTATATATGGCTATA
LOC_Os01g12110
Os.3496.1.S1_at--521--6391Chr01:6587965..6587989 (25 bp)
GATCGATCGAGTCAATTGCCTTTGC
LOC_Os01g12110
Os.3496.1.S1_at--1023--3151Chr01:6587952..6587976 (25 bp)
AATTGCCTTTGCTGCATGTGTCGGT
LOC_Os01g12110
Os.3496.1.S1_at--282--7471Chr01:6587923..6587947 (25 bp)
GTGTGACAGTGTGAGCTCCCATATA
LOC_Os01g12110
Os.3496.1.S1_at--609--7931Chr01:6587890..6587914 (25 bp)
GGATTTGTTGACTCCATTGTCAAGC
LOC_Os01g12110
Os.3496.1.S1_at--249--5791Chr01:6587775..6587799 (25 bp)
GACGACGACTTCTAGCTATGTCCAA
LOC_Os01g12110
Os.3496.1.S1_at--600--3691Chr01:6587760..6587784 (25 bp)
CTATGTCCAACCTAGCAATGTAATG
LOC_Os01g12110
Target Sequence 
GGAAGAAGTCGTCTCTCGCCATCGTCGACGGCTTCGCCGTCGAGATAACCGATGCTCAGGCGAGCATACTGAGGTTGGCG
AAGGAAGTGAGGGTGGTGGAGAAGAACCAGGAGCTTGCTTGATCGATATGNCCGGTCAAATTGATAGAGATTATTACACA
TATATATAATACATATGTGTGTGCCAATCAATCAACTACTAGATGCTTAATTTAATTTGGCATCAGCTATATATGGCTAT
ATATGTAGCTATATATATAGCAGTAAATGGTTGCAGTTAATTACTAATTAATTAAGCTAAATTGAAGGAGTTGATCGATC
GAGTCAATTGCCTTTGCTGCATGTGTCGGTGTGTGTGTGACAGTGTGAGCTCCCATATATATATTATGGATTTGTTGACT
CCATTGTCAAGCATAGCTGCTAGTATGTGTATATTAATACTGCTTAGCAGTGATAATAATAAATTAATATATGTAGTTCT
TAGGTTCTAATTATTGTCAGAGGACGACGACTTCTAGCTATGTCCAACCTAGCAATGTAATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.3496.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis