Browse Element(s) Details


Os.35020.1.S1_at

Description gb:AK069257.1
DB_XREF= gi:32979281
TID=Os.35020.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.35020 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023011O06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023011O06, full insert sequence.
FL= gb:AK069257.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0330011/11NAC domain transcription factor, putative, expressed
LOC_Os12g030407/11NAC domain transcription factor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g03280OsAffx.667.1.S1_at7/1111+1209589..1213220transposon protein, putative, Mutator sub-class
LOC_Os11g03290Os.15801.1.S1_x_at10/1111+1221863..1225462GDA1/CD39 family protein
LOC_Os11g03290OsAffx.30792.1.S1_at5/1111+1221863..1225462GDA1/CD39 family protein
LOC_Os11g03300Os.35020.1.S1_at11/1111+1232929..1234980NAC domain transcription factor, putative, expressed
LOC_Os11g03310OsAffx.31559.2.S1_at11/1111+1240174..1241368No apical meristem protein
LOC_Os11g03320Os.25164.1.A1_at8/1111+1245705..1247228hypothetical protein
LOC_Os11g03330NANA11+1249529..1252981transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g03340Os.46692.1.S1_at5/1111+1253749..1255915hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0007275biological_processdevelopment
GO:0009825biological_processmultidimensional cell growth
GO:0009908biological_processflower development
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.35020.1.S1_at--16--9692Chr12:1139621..1139645 (25 bp)
TCACGCCTAGATCATCACGATGGTT
LOC_Os12g03040
Os.35020.1.S1_at--1161--5252Chr12:1139685..1139709 (25 bp)
GAATGATGGCGTGTAGTGCAACTTC
LOC_Os12g03040
Os.35020.1.S1_at--180--8033Chr12:1139807..1139831 (25 bp)
GGAGGTTACTGCAACCAGCAGCTTT
LOC_Os12g03040
Os.35020.1.S1_at--1058--3391Chr11:1234589..1234613 (25 bp)
CAGCTTTCAGAGACTGCGACTGGCT
LOC_Os11g03300
Os.35020.1.S1_at--976--1971Chr11:1234601..1234625 (25 bp)
ACTGCGACTGGCTTTCAGTTTCAGA
LOC_Os11g03300
Os.35020.1.S1_at--1033--1431Chr11:1234623..1234647 (25 bp)
AGAACGGCAATCTGCTGAGCCATCC
LOC_Os11g03300
Os.35020.1.S1_at--357--5872Chr12:1139875..1139896 (22 bp)
GAGCCATCCATTTCCTCTGAACAAT
LOC_Os12g03040
Os.35020.1.S1_at--912--6931Chr11:1234678..1234702 (25 bp)
GTAGTAGGCGTCTAGATCCCGTTTA
LOC_Os11g03300
Os.35020.1.S1_at--411--553Chr12:1139953..1139974 (22 bp)
ATCCCGTTTACCGATCGATCTGAAG
LOC_Os12g03040
Os.35020.1.S1_at--403--6572Chr12:1140113..1140137 (25 bp)
GATTCAGATTTCTTCCTATGGCATT
LOC_Os12g03040
Os.35020.1.S1_at--324--7353Chr12:1140203..1140227 (25 bp)
GTGCAAGCTAGTACTCAAGCCAATT
LOC_Os12g03040
Target Sequence 
TCACGCCTAGATCATCACGATGGTTACGTTAACAATTATAATGTTAATGGCCTGAGGAGGAAGAGAATGATGGCGTGTAG
TGCAACTTCNTTTGATGATGGCAGCAGCAGCANNANNNNTGACTTTNTGCATGCCGTTGNCAAGAAACCGCNGCTGCTGC
CAAGTGATTCNAGGGGNAGTGGTTTTGGAGGAGGTTACTGCAACCAGCAGCTTTCAGAGACTGCGACTGGCTTTCAGTTT
CAGAACGGCAATCTGCTGAGCCATCCATTTCCTCTGAACAATCATCTGCAGATGCAGTAGTAGGCGTCTAGATCCCGTTT
ACCGATCGATCTGAAGAGAGGTGAATTAATTTCAACGAATGAAACTACAGATTCAGAGAGGAAGATACTGATTGTTCCAT
TTGTGATTTATTTTGAGGAGTTGCATGGGCAGATAGACAAACAGACGGAATTCTTGATGTAACCGATGCAAGGAAAGATT
CAGATTTCTTCCTATGGCATTAATTTGTGAGTTTTTTTTTGTTTTCATTTTCATGTACAAGAATGTAAATTATAAATGGT
AATATCGTGCAAGCTAGTACTCAAGCCAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.35020.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis