Browse Element(s) Details


Os.35084.1.S1_at

Description gb:AK069044.1
DB_XREF= gi:32979068
TID=Os.35084.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.35084 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023008D19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023008D19, full insert sequence.
FL= gb:AK069044.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2017011/11ABC transporter family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g20140NANA3+11352172..11355543transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os03g20150OsAffx.25160.1.S1_at2/113+11361946..11364415hypothetical protein
LOC_Os03g20170Os.35084.1.S1_at11/113+11374815..11377787ABC transporter family protein, expressed
LOC_Os03g20180Os.53764.1.S1_at11/113+11381482..11386939YT521-B-like family protein, expressed
LOC_Os03g20190OsAffx.3279.1.S1_at11/113+11391576..11394321pentatricopeptide, putative
LOC_Os03g20200OsAffx.11342.1.S1_at1/113+11397012..11399660transposon protein, putative, Mutator sub-class
LOC_Os03g20210Os.49973.1.S1_at11/113+11401141..11402638Eukaryotic aspartyl protease family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005215molecular_functiontransporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.35084.1.S1_at--310--5751Chr03:11377055..11377079 (25 bp)
GACGGACTTGATGATTGGCCAACAC
LOC_Os03g20170
Os.35084.1.S1_at--876--2071Chr03:11377080..11377182 (25 bp)
ACATTGTGTACATTGCCCGTGGGAA
LOC_Os03g20170
Os.35084.1.S1_at--1042--5331Chr03:11377180..11377204 (25 bp)
GAAGTTGCAACTAGCACTGCCTTTA
LOC_Os03g20170
Os.35084.1.S1_at--67--5871Chr03:11377222..11377327 (25 bp)
GAGCCAGTTATCTCTCATGAGAACA
LOC_Os03g20170
Os.35084.1.S1_at--110--5331Chr03:11377390..11377414 (25 bp)
GAAGGGCCTCCCAGAGTTTGACAAG
LOC_Os03g20170
Os.35084.1.S1_at--678--6791Chr03:11377433..11377457 (25 bp)
GTTATAGGTGATCCCGCTGCCAGAG
LOC_Os03g20170
Os.35084.1.S1_at--342--9331Chr03:11377488..11377512 (25 bp)
TCGCCTCAACGGTTGCTGGTGAAGA
LOC_Os03g20170
Os.35084.1.S1_at--302--1591Chr03:11377526..11377550 (25 bp)
AGCTCTAACAGCGTTCTTAGGCAAT
LOC_Os03g20170
Os.35084.1.S1_at--201--3091Chr03:11377548..11377572 (25 bp)
AATAATCCTACCCTGCAATTTGGCT
LOC_Os03g20170
Os.35084.1.S1_at--154--2171Chr03:11377612..11377636 (25 bp)
ACACCATCCCACAGGAGTTTTTGCA
LOC_Os03g20170
Os.35084.1.S1_at--751--6071Chr03:11377626..11377650 (25 bp)
GAGTTTTTGCAGTAACAGCCTAACA
LOC_Os03g20170
Target Sequence 
GACGGACTTGATGATTGGCCAACACACATTGTGTACATTGCCCGTGGGAAGTTGCAACTAGCACTGCCTTTAGAGAAGGT
GAAAGAAATGAGCCAGTTATCTCTCATGAGAACAGTGGAGAGCTGGCTGAGGAAAGAGAGAGATGAGGATAGGCGGAGAA
GAAAGGAACGGAAGGAGAAGGGCCTCCCAGAGTTTGACAAGGTTACTGAGGGGAGTCGGGTTATAGGTGATCCCGCTGCC
AGAGCNGTGNACAATGGGTGGGCAGCAGGGAGGCTCGCCTCAACGGTTGCTGGTGAAGAGAATTTCATTTTCAGCTCTAA
CAGCGTTCTTAGGCAATAATCCTACCCTGCAATTTGGCTTNGTAATGATGAATAACGATCCTATAGATCCAATAGATCAC
ACCATCCCACAGGAGTTTTTGCAGTAACAGCCTAACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.35084.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis