Browse Element(s) Details


Os.49973.1.S1_at

Description gb:AK119465.1
DB_XREF= gi:37989088
TID=Os.49973.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49973 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-134-A02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-134-A02, full insert sequence.
FL= gb:AK119465.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2021011/11Eukaryotic aspartyl protease family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g20170Os.35084.1.S1_at11/113+11374815..11377787ABC transporter family protein, expressed
LOC_Os03g20180Os.53764.1.S1_at11/113+11381482..11386939YT521-B-like family protein, expressed
LOC_Os03g20190OsAffx.3279.1.S1_at11/113+11391576..11394321pentatricopeptide, putative
LOC_Os03g20200OsAffx.11342.1.S1_at1/113+11397012..11399660transposon protein, putative, Mutator sub-class
LOC_Os03g20210Os.49973.1.S1_at11/113+11401141..11402638Eukaryotic aspartyl protease family protein, expressed
LOC_Os03g20220NANA3+11404087..11404392hypothetical protein
LOC_Os03g20230NANA3+11407790..11408944Eukaryotic aspartyl protease family protein
LOC_Os03g20240OsAffx.3280.1.S1_x_at11/113+11411800..11412165hypothetical protein
LOC_Os03g20240OsAffx.3280.1.S1_at11/113+11411800..11412165hypothetical protein
LOC_Os03g20240OsAffx.26082.1.S1_at2/113+11411800..11412165hypothetical protein
LOC_Os03g20240OsAffx.26082.1.S1_x_at1/113+11411800..11412165hypothetical protein
LOC_Os03g20250OsAffx.25161.1.S1_at11/113+11421926..11422204hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0003677molecular_functionDNA binding
GO:0004194molecular_functionpepsin A activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49973.1.S1_at--988--7831Chr03:11402074..11402098 (25 bp)
GGTACCATTCGTCTCAGCTGAAAGC
LOC_Os03g20210
Os.49973.1.S1_at--265--1611Chr03:11402089..11402113 (25 bp)
AGCTGAAAGCGTACTACATCTCCCT
LOC_Os03g20210
Os.49973.1.S1_at--745--3731Chr03:11402112..11402136 (25 bp)
CTCAAGGGCGTAACCGTGGGCACGA
LOC_Os03g20210
Os.49973.1.S1_at--1050--3931Chr03:11402152..11402176 (25 bp)
CGGAATCGGTGTTCGCCTTGAAGGA
LOC_Os03g20210
Os.49973.1.S1_at--621--2691Chr03:11402277..11402301 (25 bp)
AAGCTCACTGTGCACAACTCGACGT
LOC_Os03g20210
Os.49973.1.S1_at--269--8211Chr03:11402436..11402460 (25 bp)
GGAATAAGACTCACCTGCCTCGCTA
LOC_Os03g20210
Os.49973.1.S1_at--339--7451Chr03:11402482..11402506 (25 bp)
GTGTCATAGGCAACTTTCAGCAGCA
LOC_Os03g20210
Os.49973.1.S1_at--1063--9931Chr03:11402523..11402547 (25 bp)
TACGATCTGGCCAACGACATGCTGT
LOC_Os03g20210
Os.49973.1.S1_at--379--3851Chr03:11402557..11402581 (25 bp)
CTGCACGCTGCAACAAGATCTAGAA
LOC_Os03g20210
Os.49973.1.S1_at--1060--6411Chr03:11402573..11402597 (25 bp)
GATCTAGAATTGCATCTTCCTGTAA
LOC_Os03g20210
Os.49973.1.S1_at--169--3631Chr03:11402588..11402612 (25 bp)
CTTCCTGTAAACACATCGTCGTCGA
LOC_Os03g20210
Target Sequence 
GGTACCATTCGTCTCAGCTGAAAGCGTACTACATCTCCCTCAAGGGCGTAACCGTGGGCACGACGAGGCTGCCGATCCCG
GAATCGGTGTTCGCCTTGAAGGAGGATGGCACGGGCGGCACCATCGTCGACTCCGGCACCGGCATGACGATGCTGCCCGA
GGCCGTCTACAACCTCGTGTGCGACGCGTTCGTGGCCCAGACGAAGCTCACTGTGCACAACTCGACGTCGTCGTTGTCCC
AGCTCTGCTTCTCGGTGCCGCCGGGAGCCAAGCCCGACGTACCGGCGCTGGTGCTGCACTTTGAGGGCGCGACGCTGGAC
CTGCTCGGGAGAACTACATGTTTGAGATCGAGGAGGCCGGGGGAATAAGACTCACCTGCCTCGCTATCAACGCAGGGGAG
GACCTGAGTGTCATAGGCAACTTTCAGCAGCAGAACATGCACGTTCTCTACGATCTGGCCAACGACATGCTGTCCTTTGT
CCCTGCACGCTGCAACAAGATCTAGAATTGCATCTTCCTGTAAACACATCGTCGTCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49973.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis