Browse Element(s) Details


OsAffx.3279.1.S1_at

Description tigr:9631.m02001
TID=OsAffx.3279.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2019011/11pentatricopeptide, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g20170Os.35084.1.S1_at11/113+11374815..11377787ABC transporter family protein, expressed
LOC_Os03g20180Os.53764.1.S1_at11/113+11381482..11386939YT521-B-like family protein, expressed
LOC_Os03g20190OsAffx.3279.1.S1_at11/113+11391576..11394321pentatricopeptide, putative
LOC_Os03g20200OsAffx.11342.1.S1_at1/113+11397012..11399660transposon protein, putative, Mutator sub-class
LOC_Os03g20210Os.49973.1.S1_at11/113+11401141..11402638Eukaryotic aspartyl protease family protein, expressed
LOC_Os03g20220NANA3+11404087..11404392hypothetical protein
LOC_Os03g20230NANA3+11407790..11408944Eukaryotic aspartyl protease family protein
LOC_Os03g20240OsAffx.3280.1.S1_x_at11/113+11411800..11412165hypothetical protein
LOC_Os03g20240OsAffx.3280.1.S1_at11/113+11411800..11412165hypothetical protein
LOC_Os03g20240OsAffx.26082.1.S1_at2/113+11411800..11412165hypothetical protein
LOC_Os03g20240OsAffx.26082.1.S1_x_at1/113+11411800..11412165hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3279.1.S1_at--184--6251Chr03:11393405..11393429 (25 bp)
GATGGAGTCTGGTTACTCGGCTGAT
LOC_Os03g20190
OsAffx.3279.1.S1_at--4--7171Chr03:11393468..11393492 (25 bp)
GTCTCATAGCTTGCGGTATCATAGT
LOC_Os03g20190
OsAffx.3279.1.S1_at--517--911Chr03:11393500..11393524 (25 bp)
AGGCTGTGGCATATGGACTACTGAA
LOC_Os03g20190
OsAffx.3279.1.S1_at--565--8211Chr03:11393535..11393559 (25 bp)
GGAATGCCCATTCGTGTCATGAAAA
LOC_Os03g20190
OsAffx.3279.1.S1_at--1132--2351Chr03:11393558..11393582 (25 bp)
AAACCTCAGGGTTTGTGGTGACTGC
LOC_Os03g20190
OsAffx.3279.1.S1_at--698--7671Chr03:11393667..11393691 (25 bp)
GGGTTTTGCTCATGCAGGGACTACT
LOC_Os03g20190
OsAffx.3279.1.S1_at--191--7951Chr03:11393956..11393980 (25 bp)
GGATCCAGGTTTCAAAACGTCCATT
LOC_Os03g20190
OsAffx.3279.1.S1_at--182--2591Chr03:11393971..11393995 (25 bp)
AACGTCCATTTGACCGTGAAGTACA
LOC_Os03g20190
OsAffx.3279.1.S1_at--638--5331Chr03:11393988..11394012 (25 bp)
GAAGTACACCATCCGTTGCAGGCTA
LOC_Os03g20190
OsAffx.3279.1.S1_at--1010--4991Chr03:11394005..11394029 (25 bp)
GCAGGCTAACTGCATCTGGTCAATT
LOC_Os03g20190
OsAffx.3279.1.S1_at--111--491Chr03:11394018..11394041 (24 bp)
ATCTGGTCAATTGTCCTGTCGAGGA
LOC_Os03g20190
Target Sequence 
GATGGAGTCTGGTTACTCGGCTGATGGAAGCTTTGTGCTTCATGATATAGATGAGGAGCAAAAGTCTCATAGCTTGCGGT
ATCATAGTGAGAGACAGGCTGTGGCATATGGACTACTGAAAATCCCAGAAGGAATGCCCATTCGTGTCATGAAAAACCTC
AGGGTTTGTGGTGACTGCCATTCTGCAATAAAGTTGATTGCAAAGATCACTTCTAGGGAAATCATACTAAGAGATGCCAA
TAGATTCCATCATTTCAAAGATGGGTTTTGCTCATGCAGGGACTACTGGATCCAGGTTTCAAAACGTCCATTTGACCGTG
AAGTACACCATCCGTTGCAGGCTAACTGCATCTGGTCAATTGTCCTGTCGAGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3279.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis