Browse Element(s) Details


OsAffx.3280.1.S1_at

Description tigr:9631.m02006
TID=OsAffx.3280.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2024011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g20180Os.53764.1.S1_at11/113+11381482..11386939YT521-B-like family protein, expressed
LOC_Os03g20190OsAffx.3279.1.S1_at11/113+11391576..11394321pentatricopeptide, putative
LOC_Os03g20200OsAffx.11342.1.S1_at1/113+11397012..11399660transposon protein, putative, Mutator sub-class
LOC_Os03g20210Os.49973.1.S1_at11/113+11401141..11402638Eukaryotic aspartyl protease family protein, expressed
LOC_Os03g20220NANA3+11404087..11404392hypothetical protein
LOC_Os03g20230NANA3+11407790..11408944Eukaryotic aspartyl protease family protein
LOC_Os03g20240OsAffx.3280.1.S1_x_at11/113+11411800..11412165hypothetical protein
LOC_Os03g20240OsAffx.3280.1.S1_at11/113+11411800..11412165hypothetical protein
LOC_Os03g20240OsAffx.26082.1.S1_at2/113+11411800..11412165hypothetical protein
LOC_Os03g20240OsAffx.26082.1.S1_x_at1/113+11411800..11412165hypothetical protein
LOC_Os03g20250OsAffx.25161.1.S1_at11/113+11421926..11422204hypothetical protein
LOC_Os03g20260NANA3+11428263..11429438Eukaryotic aspartyl protease family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3280.1.S1_at--633--5951Chr03:11411830..11411854 (25 bp)
GAGCAATCTCCCAAGCCGATGGTTG
LOC_Os03g20240
OsAffx.3280.1.S1_at--1078--1471Chr03:11411831..11411855 (25 bp)
AGCAATCTCCCAAGCCGATGGTTGA
LOC_Os03g20240
OsAffx.3280.1.S1_at--579--454Chr12:9337859..9337995 (25 bp)
ATCTCCCAAGCCGATGGTTGAAACA
NONE
OsAffx.3280.1.S1_at--286--9514Chr12:9337860..9337995 (24 bp)
TCTCCCAAGCCGATGGTTGAAACAC
NONE
OsAffx.3280.1.S1_at--130--3712Chr11:8733665..8733688 (24 bp)
CTCCCAAGCCGATGGTTGAAACACT
NONE
OsAffx.3280.1.S1_at--268--9292Chr11:8733665..8733689 (25 bp)
TCCCAAGCCGATGGTTGAAACACTT
NONE
OsAffx.3280.1.S1_at--450--212Chr03:11411936..11411990 (25 bp)
ATTTGATCAAGAAAAGCCAGCTTGG
LOC_Os03g20240
OsAffx.3280.1.S1_at--363--10272Chr03:11411937..11411991 (25 bp)
TTTGATCAAGAAAAGCCAGCTTGGG
LOC_Os03g20240
OsAffx.3280.1.S1_at--422--4812Chr03:11412021..11412045 (25 bp)
GCTCGGGGGGCAAACACATCAGTAT
LOC_Os03g20240
OsAffx.3280.1.S1_at--1032--3932Chr03:11412024..11412048 (25 bp)
CGGGGGGCAAACACATCAGTATCAG
LOC_Os03g20240
OsAffx.3280.1.S1_at--526--10831Chr03:11412111..11412135 (25 bp)
TTGGGCCGATGGAATTGCAAAAATT
LOC_Os03g20240
Target Sequence 
GAGCAATCTCCCAAGCCGATGGTTGAAACACTTCAAGATACAGTTGATGAAGCAGTTCATCGCGCATTATTTAATCAATG
TGGAGTTTTGGCGGATACATTACAAAATTTGATCAAGAAAAGCCAGCTTGGGGGGCAGATTGAAGAACAACAACAGCATC
GGCTCGGGGGGCAAACACATCAGTATCAGCATGATGAGCTATATCAACAATATCGGCCAGAAGAATCTCAAAGACATCAA
AATATAGAAGATTGGGCCGATGGAATTGCAAAAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3280.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis