Browse Element(s) Details


Os.35155.1.S1_at

Description gb:AK068768.1
DB_XREF= gi:32978793
TID=Os.35155.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.35155 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013162A19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013162A19, full insert sequence.
FL= gb:AK068768.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4196211/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g41940Os.57136.1.S1_at10/1112+25964821..25968018Remorin, C-terminal region family protein, expressed
LOC_Os12g41950Os.22272.1.S1_at10/1112+25968764..25974737Auxin response factor 6, putative, expressed
LOC_Os12g41956Os.12400.1.S1_x_at9/1112+25983062..25987159Galactosyltransferase family, putative, expressed
LOC_Os12g41962Os.35155.1.S1_at11/1112+25988161..25992511expressed protein
LOC_Os12g41970OsAffx.32147.1.S1_at11/1112+25992801..25993931Lipase family protein
LOC_Os12g41980OsAffx.32148.1.S1_at11/1112+26000435..26001631Lipase family protein
LOC_Os12g41990OsAffx.21485.1.S1_at5/1112+26005139..26006857transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g42000OsAffx.32149.3.S1_at11/1112+26010614..26011272hypothetical protein
LOC_Os12g42000Os.29072.1.S1_at2/1112+26010614..26011272hypothetical protein
LOC_Os12g42010OsAffx.7860.1.S1_at11/1112+26012052..26013206Lipase family protein

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Gene Ontology Classification
GO idTypeName
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.35155.1.S1_at--361--8111Chr12:25991166..25991190 (25 bp)
GGACTTAGTTAGCTACACTTTCCTT
LOC_Os12g41962
Os.35155.1.S1_at--590--2011Chr12:25991182..25991206 (25 bp)
ACTTTCCTTAGTTCGATTGTCAATC
LOC_Os12g41962
Os.35155.1.S1_at--1114--7071Chr12:25991200..25991224 (25 bp)
GTCAATCCATGTCATATGTCCTTAA
LOC_Os12g41962
Os.35155.1.S1_at--242--1451Chr12:25992137..25992161 (25 bp)
AGAAGAACACGTCTTGCCTGCTATT
LOC_Os12g41962
Os.35155.1.S1_at--84--7151Chr12:25992147..25992171 (25 bp)
GTCTTGCCTGCTATTTATGTTGGTT
LOC_Os12g41962
Os.35155.1.S1_at--415--10091Chr12:25992162..25992186 (25 bp)
TATGTTGGTTTTGCAGCGTCGATCC
LOC_Os12g41962
Os.35155.1.S1_at--218--7631Chr12:25992212..25992236 (25 bp)
GGGACTAACCCACTTTATTGTGCAA
LOC_Os12g41962
Os.35155.1.S1_at--1022--7892Chr12:25999847..25999871 (25 bp)
GGTTGTAGGAACACTTGTCGATGAC
NONE
Os.35155.1.S1_at--51--8351Chr12:25992310..25992334 (25 bp)
GGCGTAGACTATTTCAGATCAGGTT
LOC_Os12g41962
Os.35155.1.S1_at--243--6431Chr12:25992326..25992350 (25 bp)
GATCAGGTTTCTGGTTAGCATTAAC
LOC_Os12g41962
Os.35155.1.S1_at--809--1271Chr12:25992361..25992385 (25 bp)
AGATCTAGAAATGCGTTTGTCGGAG
LOC_Os12g41962
Target Sequence 
GGACTTAGTTAGCTACACTTTCCTTAGTTCGATTGTCAATCCATGTCATATGTCCTTAAAAAGGAGGCTCAGAAGGTTTC
TGTCATCAAAACCCACNGCAGTAGTGATACCATGAATATATATTTAGTTGAAGCTGTTTCAGAAGAACACGTCTTGCCTG
CTATTTATGTTGGTTTTGCAGCGTCGATCCTGGGGAACATGTAACTCGTAAAATAGGGACTAACCCACTTTATTGTGCAA
TTCTTTTGTTTCCTGGCCAAATGGTTGTAGGAACACTTGTCGATGACNCCCAACTTGAAATTTCTNNAGATTAGGCGTAG
ACTATTTCAGATCAGGTTTCTGGTTAGCATTAACAGTGTTGGATAGATCTAGAAATGCGTTTGTCGGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.35155.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis