Browse Element(s) Details


Os.35188.1.S1_at

Description gb:AK068644.1
DB_XREF= gi:32978661
TID=Os.35188.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.35188 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013158J09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013158J09, full insert sequence.
FL= gb:AK068644.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0213010/11expressed protein
LOC_Os11g021905/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g02080Os.11549.1.S1_at11/1112+622582..625113Peroxidase 52 precursor, putative, expressed
LOC_Os12g02090OsAffx.31549.2.S1_x_at3/1112+626213..626638TCP family transcription factor containing protein
LOC_Os12g02090OsAffx.31549.1.S1_x_at2/1112+626213..626638TCP family transcription factor containing protein
LOC_Os12g02100Os.39076.1.A1_s_at11/1112+631454..637030expressed protein
LOC_Os12g02100Os.52675.1.S1_at11/1112+631454..637030expressed protein
LOC_Os12g02110OsAffx.19452.1.S1_x_at11/1112+637470..638114hypothetical protein
LOC_Os12g02120Os.5998.1.S1_at10/1112+638746..642600Dual specificity phosphatase, catalytic domain containing protein, expressed
LOC_Os12g02130Os.35188.1.S1_at10/1112+644370..650343expressed protein
LOC_Os12g02140NANA12+652258..652560hypothetical protein
LOC_Os12g02150Os.46014.1.S1_s_at10/1112+655105..657392expressed protein
LOC_Os12g02150OsAffx.18634.1.S1_at3/1112+655105..657392expressed protein
LOC_Os12g02160OsAffx.31551.2.S1_s_at11/1112+657672..658919hypothetical protein
LOC_Os12g02160OsAffx.31551.1.S1_at10/1112+657672..658919hypothetical protein
LOC_Os12g02170OsAffx.30780.1.S1_at11/1112+662016..663215hypothetical protein
LOC_Os12g02180OsAffx.19454.1.S1_at4/1112+673082..675628hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.35188.1.S1_at--233--3371NONE
CACCTGGTCATTCTTGGTCCAAGGA
NONE
Os.35188.1.S1_at--859--752Chr12:649885..649909 (25 bp)
ATGTACAGTCAGTTTGGTCGTTCAA
LOC_Os12g02130
Os.35188.1.S1_at--956--4912Chr12:649957..649981 (25 bp)
GCTTCCTTGCCTCATTTGAGTTTAG
LOC_Os12g02130
Os.35188.1.S1_at--1068--6612Chr12:649998..650022 (25 bp)
GTTGGACTGTATTCCTTGGACGTGA
LOC_Os12g02130
Os.35188.1.S1_at--645--612Chr12:650063..650087 (25 bp)
ATGCGTTAGCATTAGGTCTCTCACC
LOC_Os12g02130
Os.35188.1.S1_at--820--9672Chr12:650083..650107 (25 bp)
TCACCTGATGTTTTGGCGCATTTAA
LOC_Os12g02130
Os.35188.1.S1_at--934--812Chr12:650147..650171 (25 bp)
ATGGTGCACAATCACTTGCTTGCTC
LOC_Os12g02130
Os.35188.1.S1_at--905--10711Chr12:650162..650186 (25 bp)
TTGCTTGCTCAGATGCTCTTATTGA
LOC_Os12g02130
Os.35188.1.S1_at--1156--1212Chr12:650208..650232 (25 bp)
AGTTCAGTCAATTGTCCAGCACTTC
LOC_Os12g02130
Os.35188.1.S1_at--571--1492Chr12:650225..650249 (25 bp)
AGCACTTCACTGGATTCCCTAGTTT
LOC_Os12g02130
Os.35188.1.S1_at--498--10452Chr12:650268..650292 (25 bp)
TTAGTTCCAGTGTGACCTTTGCTTT
LOC_Os12g02130
Target Sequence 
CACCTGGTCATTCTTGGTCCAAGGAGGCAGTGGTGCTGAATGGACCTCAGGAAGCTAGTAAGATTTGCTCACCAACAGGG
GCACATGTTGGTGGTGGCTTTTTTTCAACTAATCCTGATGTACAGTCAGTTTGGTCGTTCAATCAAAAAGAGACAACATA
GAACATATAAAACACAATGTCAAGCCAATGCTTCCTTGCCTCATTTGAGTTTAGGAAGTTGAGGTGATATGTTGGACTGT
ATTCCTTGGACGTGAATGATAGTTCCCTTTTATTTAGTATCACTTACCTGTTAACATGCGTTAGCATTAGGTCTCTCACC
TGATGTTTTGGCGCATTTAACCTTTTTTTTGGATTCAATGCAAAATGGGCTGGGAACTCATGGTGCACAATCACTTGCTT
GCTCAGATGCTCTTATTGATGTGGTGACTAGTGAAATCATAGTTCAGTCAATTGTCCAGCACTTCACTGGATTCCCTAGT
TTGCCCTGTGGTTGAACTGGTTAGTTCCAGTGTGACCTTTGCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.35188.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis