Browse Element(s) Details


OsAffx.31551.2.S1_s_at

Description tigr:9639.m00125
TID=OsAffx.31551.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0216011/11hypothetical protein
LOC_Os11g0221011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g02100Os.39076.1.A1_s_at11/1112+631454..637030expressed protein
LOC_Os12g02100Os.52675.1.S1_at11/1112+631454..637030expressed protein
LOC_Os12g02110OsAffx.19452.1.S1_x_at11/1112+637470..638114hypothetical protein
LOC_Os12g02120Os.5998.1.S1_at10/1112+638746..642600Dual specificity phosphatase, catalytic domain containing protein, expressed
LOC_Os12g02130Os.35188.1.S1_at10/1112+644370..650343expressed protein
LOC_Os12g02140NANA12+652258..652560hypothetical protein
LOC_Os12g02150Os.46014.1.S1_s_at10/1112+655105..657392expressed protein
LOC_Os12g02150OsAffx.18634.1.S1_at3/1112+655105..657392expressed protein
LOC_Os12g02160OsAffx.31551.2.S1_s_at11/1112+657672..658919hypothetical protein
LOC_Os12g02160OsAffx.31551.1.S1_at10/1112+657672..658919hypothetical protein
LOC_Os12g02170OsAffx.30780.1.S1_at11/1112+662016..663215hypothetical protein
LOC_Os12g02180OsAffx.19454.1.S1_at4/1112+673082..675628hypothetical protein
LOC_Os12g02200Os.1310.1.S1_a_at11/1112+678079..681269CBL-interacting serine/threonine-protein kinase 15, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31551.2.S1_s_at--654--10532Chr12:658820..658844 (25 bp)
TTCATGGACAGGTTCCGCAATTTCC
LOC_Os12g02160
OsAffx.31551.2.S1_s_at--661--8092Chr12:658815..658839 (25 bp)
GGACAGGTTCCGCAATTTCCCATGT
LOC_Os12g02160
OsAffx.31551.2.S1_s_at--126--1813Chr12:658769..658793 (25 bp)
ACCCCAATGCATCACCGAAACGAAA
LOC_Os12g02160
OsAffx.31551.2.S1_s_at--548--3352Chr12:658757..658781 (25 bp)
CACCGAAACGAAAGATCTCTCGACT
LOC_Os12g02160
OsAffx.31551.2.S1_s_at--653--3412Chr12:658518..658542 (25 bp)
CAGCAACCATTGCTTCGAGGTGCTC
LOC_Os12g02160
OsAffx.31551.2.S1_s_at--434--10832Chr12:658479..658503 (25 bp)
TTGTGAAAGGATCCCCATATGGCGT
LOC_Os12g02160
OsAffx.31551.2.S1_s_at--52--2192Chr12:658384..658408 (25 bp)
ACACTATCTACGTTTCTTCCAAGCT
LOC_Os12g02160
OsAffx.31551.2.S1_s_at--440--9572Chr12:658370..658394 (25 bp)
TCTTCCAAGCTCTGTGGCACTCACG
LOC_Os12g02160
OsAffx.31551.2.S1_s_at--658--3892Chr12:658359..658383 (25 bp)
CTGTGGCACTCACGCCTTTGACACG
LOC_Os12g02160
OsAffx.31551.2.S1_s_at--596--9192Chr12:658012..658036 (25 bp)
TGCCTCCCCGTGGTACCAAAGATGA
LOC_Os12g02160
OsAffx.31551.2.S1_s_at--450--4192Chr12:658006..658030 (25 bp)
CCCGTGGTACCAAAGATGATCAACA
LOC_Os12g02160
Target Sequence 
TTCATGGACAGGTTCCGCAATTTCCCATGTCCCTTGCTCAACCTCCAGCCCACCCCAATGCATCACCGAAACGAAAGATC
TCTCGACTTGGTCACCCTTCTCGGCGACGACGAGACCAAGATCCTCACCGCCGACAACCATGGACACACCGTGCTCTTCG
ACGCCGCCTCCTACTCCGTCGTCCACTTCCCCAACCTCAATTGTTCCAAGGGGTATGATGCCATGGCCGTCTCCATCAAC
CAAGAACCGGACTGCCTCTACGTCCTCAACCTCAGACACCACCCCACTACCAGCAACCATTGCTTCGAGGTGCTCAGCTA
TGGGGTTTTTTGTGAAAGGATCCCCATATGGCGTTCTCTACCGCCGCCGCCCTTCACAACGACCACCCAAACTACAATTA
CCTCCTACACAACACTATCTACGTTTCTTCCAAGCTCTGTGGCACTCACGCCTTTGACACGATGGTGCCTCCCCGTGGTA
CCAAAGATGATCAACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31551.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis