Browse Element(s) Details


OsAffx.30780.1.S1_at

Description tigr:9640.m00119
TID=OsAffx.30780.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0222011/11hypothetical protein
LOC_Os12g0217011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g02170OsAffx.19452.1.S1_x_at11/1111+600257..600898expressed protein
LOC_Os11g02180Os.5998.1.S1_at5/1111+601590..605844Dual specificity phosphatase, catalytic domain containing protein, expressed
LOC_Os11g02190Os.35188.1.S1_at5/1111+609006..614403expressed protein
LOC_Os11g02200OsAffx.18634.1.S1_at11/1111+617440..619126expressed protein
LOC_Os11g02200Os.46014.1.S1_s_at5/1111+617440..619126expressed protein
LOC_Os11g02210OsAffx.31551.2.S1_s_at11/1111+619887..620816hypothetical protein
LOC_Os11g02210OsAffx.31551.2.S1_at11/1111+619887..620816hypothetical protein
LOC_Os11g02210OsAffx.31551.1.S1_at3/1111+619887..620816hypothetical protein
LOC_Os11g02220OsAffx.30780.1.S1_at11/1111+622812..623552hypothetical protein
LOC_Os11g02230OsAffx.19454.1.S1_at11/1111+625870..627066hypothetical protein
LOC_Os11g02240Os.1310.1.S1_a_at11/1111+629587..632625CBL-interacting serine/threonine-protein kinase 15, putative, expressed
LOC_Os11g02250OsAffx.19456.1.S1_at11/1111+640564..641001Zinc finger, C3HC4 type family protein
LOC_Os11g02260OsAffx.30781.2.S1_at11/1111+641580..641984Zinc finger, C3HC4 type family protein
LOC_Os11g02260OsAffx.30781.1.S1_s_at11/1111+641580..641984Zinc finger, C3HC4 type family protein
LOC_Os11g02270Os.50557.1.S1_at1/1111+646610..647878expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30780.1.S1_at--518--2092Chr12:662572..662596 (25 bp)
ACATGCATGCCGACATTACTTCCTA
LOC_Os12g02170
OsAffx.30780.1.S1_at--1001--6332Chr12:662501..662525 (25 bp)
GATGCTACTTATGCCTTTGACACAG
LOC_Os12g02170
OsAffx.30780.1.S1_at--533--5912Chr12:662408..662432 (25 bp)
GAGCTCAAGCTGTGGTTCGGACTAT
LOC_Os12g02170
OsAffx.30780.1.S1_at--817--2152Chr12:662368..662392 (25 bp)
ACAGCTTATGCGCTTGTGATCTCCT
LOC_Os12g02170
OsAffx.30780.1.S1_at--1082--1512Chr12:662314..662338 (25 bp)
AGCAGCAGCACACTTGGGTGGACCT
LOC_Os12g02170
OsAffx.30780.1.S1_at--11--8632Chr12:662300..662324 (25 bp)
TGGGTGGACCTCGACATACCTGAAT
LOC_Os12g02170
OsAffx.30780.1.S1_at--314--292Chr12:662285..662309 (25 bp)
ATACCTGAATCCTGGTTGCCCTATA
LOC_Os12g02170
OsAffx.30780.1.S1_at--136--10712Chr12:662270..662294 (25 bp)
TTGCCCTATAACATTGACCTCATCA
LOC_Os12g02170
OsAffx.30780.1.S1_at--38--6792Chr12:662229..662253 (25 bp)
GTTTTGCGTCGTCAAGATTTTCCGT
LOC_Os12g02170
OsAffx.30780.1.S1_at--666--5592Chr12:662130..662154 (25 bp)
GAAATTCGCTGTCTTAACTGGCCTA
LOC_Os12g02170
OsAffx.30780.1.S1_at--78--2733Chr12:662048..662072 (25 bp)
AAGCACAAGTCCATGTACTACAACT
LOC_Os12g02170
Target Sequence 
ACATGCATGCCGACATTACTTCCTACACNGTGGTTGACAGCTCCACTATNTATGTTTCTTCNATGGAGCCAGATGCTACT
TATGCCTTTGACACAGTGGGGCNTCAGTGGCGTCGCCTGGGCTGCTGGACAATGCCATTCGATGGCAAAGCTGAGTATGT
GCCGGAGCTCAAGCTGTGGTTCGGACTATCCGTCNACCACCCCTACAGCTTATGCGCTTGTGATCTCCTCTCCGATGCAG
CAAAGCCACCCACGGTGCAGCAGCAGCACACTTGGGTGGACCTCGACATACCTGAATCCTGGTTGCCCTATAACATTGAC
CTCATCAACCTGGGCNGTGGCAGGTTTTGCGTCGTCAAGATTTTCCGTNNTATNGCAGNTGACTGCACNNTGGNTTTCTC
CGATTACGATGACGATGACNCAATGGACTCTGACCNGATTCANGGGAAATTCGCTGTCTTAACTGGCCTACAGATNGTTN
GNCCTTGTGGTAAAGATGGTGATGATCAAGGTGGTGTCCGGATGATCAAGCACAAGTCCATGTACTACAACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30780.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis