Browse Element(s) Details


Os.5998.1.S1_at

Description gb:AK072567.1
DB_XREF= gi:32982590
TID=Os.5998.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5998 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023127J23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023127J23, full insert sequence.
FL= gb:AK072567.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0212010/11Dual specificity phosphatase, catalytic domain containing protein, expressed
LOC_Os11g021805/11Dual specificity phosphatase, catalytic domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g02060Os.55595.1.S1_at5/1112+613316..614845Cationic peroxidase 1 precursor, putative, expressed
LOC_Os12g02070Os.50351.1.S1_s_at3/1112+615651..616635expressed protein
LOC_Os12g02070Os.50351.1.S1_at1/1112+615651..616635expressed protein
LOC_Os12g02080Os.11549.1.S1_at11/1112+622582..625113Peroxidase 52 precursor, putative, expressed
LOC_Os12g02090OsAffx.31549.2.S1_x_at3/1112+626213..626638TCP family transcription factor containing protein
LOC_Os12g02090OsAffx.31549.1.S1_x_at2/1112+626213..626638TCP family transcription factor containing protein
LOC_Os12g02100Os.39076.1.A1_s_at11/1112+631454..637030expressed protein
LOC_Os12g02100Os.52675.1.S1_at11/1112+631454..637030expressed protein
LOC_Os12g02110OsAffx.19452.1.S1_x_at11/1112+637470..638114hypothetical protein
LOC_Os12g02120Os.5998.1.S1_at10/1112+638746..642600Dual specificity phosphatase, catalytic domain containing protein, expressed
LOC_Os12g02130Os.35188.1.S1_at10/1112+644370..650343expressed protein
LOC_Os12g02140NANA12+652258..652560hypothetical protein
LOC_Os12g02150Os.46014.1.S1_s_at10/1112+655105..657392expressed protein
LOC_Os12g02150OsAffx.18634.1.S1_at3/1112+655105..657392expressed protein
LOC_Os12g02160OsAffx.31551.2.S1_s_at11/1112+657672..658919hypothetical protein
LOC_Os12g02160OsAffx.31551.1.S1_at10/1112+657672..658919hypothetical protein
LOC_Os12g02170OsAffx.30780.1.S1_at11/1112+662016..663215hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006470biological_processprotein amino acid dephosphorylation
GO:0008138molecular_functionprotein tyrosine/serine/threonine phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5998.1.S1_at--929--1432Chr12:639270..639294 (25 bp)
AGAACCTTAGCTCCTCTAGTAGTAT
LOC_Os12g02120
Os.5998.1.S1_at--696--1192Chr12:639253..639277 (25 bp)
AGTAGTATTCTTCTTTGCTGCCAGA
LOC_Os12g02120
Os.5998.1.S1_at--885--7872Chr12:639205..639229 (25 bp)
GGTTTTGATTCACCTATCCTCAGAA
LOC_Os12g02120
Os.5998.1.S1_at--213--4733Chr03:15917624..15917643 (20 bp)
GCTGGTCTGGATGATCTTGGTTCTT
NONE
Os.5998.1.S1_at--746--3611Chr12:639083..639107 (25 bp)
CTTGGTTCTTGGTTGCAATTGCGTA
LOC_Os12g02120
Os.5998.1.S1_at--468--3151Chr12:639067..639091 (25 bp)
AATTGCGTAGTCTTAATGGCGACCA
LOC_Os12g02120
Os.5998.1.S1_at--956--10751Chr12:639033..639057 (25 bp)
TTGGGAAACCCACACGCACATAGTG
LOC_Os12g02120
Os.5998.1.S1_at--565--2951Chr12:638984..639008 (25 bp)
AAGGCCGTCTTGAGACTGTCACTTT
LOC_Os12g02120
Os.5998.1.S1_at--758--5732Chr12:638971..638995 (25 bp)
GACTGTCACTTTGCTCATGTGTACG
LOC_Os12g02120
Os.5998.1.S1_at--70--6652Chr12:638787..638811 (25 bp)
GTTGTAGACAAAGCATTCCATTCCT
LOC_Os12g02120
Os.5998.1.S1_at--511--91NONE
ATTCCTACTGGAATTTGGCTGTGCA
NONE
Target Sequence 
AGAACCTTAGCTCCTCTAGTAGTATTCTTCTTTGCTGCCAGATTGCTAGCTGGTGCAGATGAAGAGGTTTTGATTCACCT
ATCCTCAGAATAAAGCTCAGACAAGATCTAATTTAGTAGGTATCTGATAATAATAAGAATGACAAAATAAGGAGGTGCCA
GAAGATGGCATTGCTGGTCTGGATGATCTTGGTTCTTGGTTGCAATTGCGTAGTCTTAATGGCGACCAGTTGTGTAATTG
GGAAACCCACACGCACATAGTGCCTTGTAAATTCAGAGTATCGAATAAGGCCGTCTTGAGACTGTCACTTTGCTCATGTG
TACGGNTATTGCTGTTGAAAGTGAAACACATACTATTGCTGAAAGTGAAAATTCATCATATCATCGCCAAATGTGATGTA
TGCATGTTCAGAGGTTGACTGCGGATGTTTAAGTTTACTGATATTTATGTTTTCCTGTCAANNNNANNANNANAANAANN
AATGTTGTAGACAAAGCATTCCATTCCTACTGGAATTTGGCTGTGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5998.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis