Browse Element(s) Details


Os.35212.1.S1_x_at

Description gb:CB664391
DB_XREF= gi:29668116
DB_XREF=OSJNEd10B09.r
CLONE=OSJNEd10B09
TID=Os.35212.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.35212 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative ATP-dependent proteinase LON2 (OJ1165_F02.25), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4896011/11Lon protease homolog 2, mitochondrial precursor, putative, expressed
LOC_Os07g489501/11betaine-aldehyde dehydrogenase, putative
LOC_Os03g193501/11ATP-dependent protease La family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g48910NANA7+29266595..29268155transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os07g48920Os.16886.1.S1_at11/117+29269837..29276052aldehyde dehydrogenase family protein, expressed
LOC_Os07g48920Os.16886.2.S1_at3/117+29269837..29276052aldehyde dehydrogenase family protein, expressed
LOC_Os07g48930OsAffx.28960.1.S1_at11/117+29276651..29277271hypothetical protein
LOC_Os07g48940OsAffx.22589.1.S1_at11/117+29278401..29280315F-box domain containing protein
LOC_Os07g48950Os.16886.2.S1_at9/117+29287535..29289922betaine-aldehyde dehydrogenase, putative
LOC_Os07g48950Os.35212.1.S1_x_at1/117+29287535..29289922betaine-aldehyde dehydrogenase, putative
LOC_Os07g48960Os.35212.1.S1_x_at11/117+29290616..29301149Lon protease homolog 2, mitochondrial precursor, putative, expressed
LOC_Os07g48960Os.47596.1.S1_at10/117+29290616..29301149Lon protease homolog 2, mitochondrial precursor, putative, expressed
LOC_Os07g48970Os.7444.1.S1_x_at11/117+29302048..29306895expressed protein
LOC_Os07g48980Os.1479.1.S1_at11/117+29321412..29322933Nicotianamine synthase 3, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006510biological_processATP-dependent proteolysis
GO:0005739cellular_componentmitochondrion
GO:0004028molecular_function3-chloroallyl aldehyde dehydrogenase activity
GO:0004176molecular_functionATP-dependent peptidase activity
GO:0005524molecular_functionATP binding
GO:0008236molecular_functionserine-type peptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.35212.1.S1_x_at--907--2912Chr07:29291733..29291757 (25 bp)
AAGGATGGCCCCAGTGCTGGATGCA
LOC_Os07g48960
Os.35212.1.S1_x_at--1053--4711Chr07:29291718..29291742 (25 bp)
GCTGGATGCACCATGATCACATCAA
LOC_Os07g48960
Os.35212.1.S1_x_at--777--7251Chr07:29291689..29291713 (25 bp)
GTCCTTAGCTATGGGAAAACCTGTT
LOC_Os07g48960
Os.35212.1.S1_x_at--65--5851Chr07:29291658..29291682 (25 bp)
GACCTTGCGATGACGGGTGAAGTAA
LOC_Os07g48960
Os.35212.1.S1_x_at--676--2551Chr07:29291629..29291653 (25 bp)
AACTGGCCGAATCCTTCCAATTGGC
LOC_Os07g48960
Os.35212.1.S1_x_at--113--2791Chr07:29291182..29291206 (25 bp)
AAGAGAAGACCATTGCTGCCAGGAG
LOC_Os07g48960
Os.35212.1.S1_x_at--178--7051Chr07:29291150..29291174 (25 bp)
GTAAAGACAATCGTATTCCCAGCAG
LOC_Os07g48960
Os.35212.1.S1_x_at--164--6312Chr07:29291108..29291132 (25 bp)
GATGAGCTTGCTCCCAATGTGAAGG
LOC_Os07g48960
Os.35212.1.S1_x_at--49--251Chr07:29291038..29291062 (25 bp)
ATATAGCTTTCCAGAGTGAGACTCA
LOC_Os07g48960
Os.35212.1.S1_x_at--840--6571Chr07:29290976..29291000 (25 bp)
GATTGTTGAGAGACATGGGCACCAA
LOC_Os07g48960
Os.35212.1.S1_x_at--523--6991Chr07:29290872..29290896 (25 bp)
GTACGCGCCGTGTAGCAGTAAATGT
LOC_Os07g48960
Target Sequence 
AAGGATGGCCCCAGTGCTGGATGCACCATGATCACATCAATGTTGTCCTTAGCTATGGGAAAACCTGTTAAGAAGGACCT
TGCGATGACGGGTGAAGTAACATNAACTGGCCGAATCCTTCCAATTGGCGGGGTCAAAGAGAAGACCATTGCTGCCAGGA
GAAGTGCAGTAAAGACAATCGTATTCCCAGCAGCGAATAAAAGGGATNTCGATGAGCTTGCTCCCAATGTGAAGGAGGGT
CTTGAAGTTCATTTTGTTGATACATACAATGAAATATTTGATATAGCTTTCCAGAGTGAGACTCAGACAGAAACAAGCTA
GCAGTTCAGNTTCAAGTGTTGAGATTGTTGAGAGACATGGGCACCAANTGAATACCNAAGGGAGTTTTNCAGNTAGACTA
TTNTNTNNAACATCAAAANTAANTTGATTGATCACCNNTTTTTTTTGTACGCGCCGTGTAGCAGTAAATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.35212.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis