Browse Element(s) Details


Os.35279.1.S1_at

Description gb:AK068220.1
DB_XREF= gi:32978238
TID=Os.35279.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.35279 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013145N15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013145N15, full insert sequence.
FL= gb:AK068220.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3645011/11transcription factor jumonji, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g36410OsAffx.31324.1.S1_at11/1111+20967756..20970788NB-ARC domain containing protein
LOC_Os11g36420Os.21345.1.S1_at11/1111+20974391..20978324sialyltransferase, putative, expressed
LOC_Os11g36430Os.8445.1.S1_at11/1111+20978869..20983802RING-H2 finger protein RHF2a, putative, expressed
LOC_Os11g36440OsAffx.7314.1.S1_at11/1111+20984661..20988746carotenoid isomerase, putative, expressed
LOC_Os11g36450Os.35279.1.S1_at11/1111+20989245..20991948transcription factor jumonji, putative, expressed
LOC_Os11g36460NANA11+20993247..20994542Structural maintenance of chromosome 5, putative
LOC_Os11g36470Os.50923.1.S1_at11/1111+20995744..21014944Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os11g36470OsAffx.31325.1.S1_at11/1111+20995744..21014944Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os11g36470Os.21343.1.S1_at1/1111+20995744..21014944Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os11g36470Os.50936.1.S1_x_at1/1111+20995744..21014944Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os11g36470OsAffx.10335.1.S1_at1/1111+20995744..21014944Ubiquitin carboxyl-terminal hydrolase family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0007166biological_processcell surface receptor linked signal transduction
GO:0003700molecular_functiontranscription factor activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.35279.1.S1_at--422--7731Chr11:20990607..20990631 (25 bp)
GGTGGCATTTGGTTATCAATCTGGA
LOC_Os11g36450
Os.35279.1.S1_at--431--3871Chr11:20989725..20989749 (25 bp)
CTGTTGAATGTTCTTGACTTTCTCA
LOC_Os11g36450
Os.35279.1.S1_at--662--1311Chr11:20989700..20989724 (25 bp)
AGAGGCCCAATGCAAGTGAACTTGT
LOC_Os11g36450
Os.35279.1.S1_at--137--2631Chr11:20989653..20989677 (25 bp)
AACCTGCATGACAAGTTCCGCAATG
LOC_Os11g36450
Os.35279.1.S1_at--893--3411Chr11:20989575..20989599 (25 bp)
CAGAAGGCTGCTGCTCGCAAGAAGA
LOC_Os11g36450
Os.35279.1.S1_at--258--2331Chr11:20989551..20989575 (25 bp)
AAAGTCTCGTTCTGGGAATCTGCGG
LOC_Os11g36450
Os.35279.1.S1_at--616--7611Chr11:20989538..20989562 (25 bp)
GGGAATCTGCGGTAGATGCCAATAC
LOC_Os11g36450
Os.35279.1.S1_at--428--6731Chr11:20989501..20989525 (25 bp)
GTTCTCATTCTGATTTCGTTTCTAG
LOC_Os11g36450
Os.35279.1.S1_at--346--2831Chr11:20989432..20989456 (25 bp)
AAGTTCGACGATTTTGCCATTCCAT
LOC_Os11g36450
Os.35279.1.S1_at--152--4931Chr11:20989353..20989377 (25 bp)
GCATTGTCTGAATCTGTCTTAACTG
LOC_Os11g36450
Os.35279.1.S1_at--757--6931Chr11:20989304..20989328 (25 bp)
GTAGTCCCAGACATGTATTTCATTG
LOC_Os11g36450
Target Sequence 
GGTGGCATTTGGTTATCAATCTGGAGGAATCTATTGCGATTACTCAGAATTATGTGAGCAGGAGGAATCTGTTGAATGTT
CTTGACTTTCTCAAGAGGCCCAATGCAAGTGAACTTGTATCAGGGACTACAGACAGGGTAAACCTGCATGACAAGTTCCG
CAATGCCATNGANATGACTTATCCTGGGATGATTAAACAGCTTGAACTTGAAGCTCAGCAGAAGGCTGCTGCTCGCAAGA
AGAAAGTCTCGTTCTGGGAATCTGCGGTAGATGCCAATACNGGAGGATTCAAGTTCTCATTCTGATTTCGTTTCTAGCAG
CTAGGTCTGTNAGTCTGATACTTGATTGCTGTTCNTGGTGAAAGTTCGACGATTTTGCCATTCCATTTAAATGCTCNATC
ACATCTGATTTCCTACCTGAATTCAGGTTTATGAGCCTNTGCATTGTCTGAATCTGTCTTAACTGTATCATCTTAAATTT
TGGAGGAATGTAGTCCCAGACATGTATTTCATTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.35279.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis