Browse Element(s) Details


Os.35343.1.A1_at

Description gb:AK067922.1
DB_XREF= gi:32977940
TID=Os.35343.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.35343 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013121J10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013121J10, full insert sequence.
FL= gb:AK067922.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0337011/11NAC-domain containing protein 21/22, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g03320Os.25164.1.A1_at8/1111+1245705..1247228hypothetical protein
LOC_Os11g03330NANA11+1249529..1252981transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g03340Os.46692.1.S1_at5/1111+1253749..1255915hypothetical protein
LOC_Os11g03360OsAffx.30795.2.S1_at11/1111+1260957..1266500hypothetical protein
LOC_Os11g03360OsAffx.23640.3.S1_x_at6/1111+1260957..1266500hypothetical protein
LOC_Os11g03360OsAffx.30795.1.S1_x_at5/1111+1260957..1266500hypothetical protein
LOC_Os11g03360OsAffx.30795.3.S1_at4/1111+1260957..1266500hypothetical protein
LOC_Os11g03360OsAffx.23640.1.S1_x_at1/1111+1260957..1266500hypothetical protein
LOC_Os11g03370Os.35343.1.A1_at11/1111+1268315..1270180NAC-domain containing protein 21/22, putative, expressed
LOC_Os11g03380Os.11848.1.S1_at11/1111+1273459..1278085expressed protein
LOC_Os11g03380OsAffx.7454.1.S1_at1/1111+1273459..1278085expressed protein
LOC_Os11g03390Os.8564.1.S1_at11/1111+1279055..1280691FHA domain containing protein, expressed
LOC_Os11g03390Os.10524.1.S1_x_at2/1111+1279055..1280691FHA domain containing protein, expressed
LOC_Os11g03400Os.9193.1.S1_s_at11/1111+1284453..128525240S ribosomal protein S16, putative, expressed
LOC_Os11g03400Os.9193.1.S1_at11/1111+1284453..128525240S ribosomal protein S16, putative, expressed
LOC_Os11g03410Os.15794.1.S1_at5/1111+1287862..1291333secondary cell wall-related glycosyltransferase family 47, putative, expressed
LOC_Os11g03410Os.35323.1.S1_at1/1111+1287862..1291333secondary cell wall-related glycosyltransferase family 47, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007275biological_processdevelopment
GO:0010072biological_processprimary shoot apical meristem specification
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.35343.1.A1_at--1024--6991Chr11:1269580..1269604 (25 bp)
GTACTGCTAGTGCTGGTAGCTTCCA
LOC_Os11g03370
Os.35343.1.A1_at--343--8611Chr11:1269754..1269778 (25 bp)
TGGTGAAAGCCCTACGAGATGTCAT
LOC_Os11g03370
Os.35343.1.A1_at--1077--8491Chr11:1269797..1269821 (25 bp)
TGGCATGCCGCAGTACAAGTTAGAT
LOC_Os11g03370
Os.35343.1.A1_at--348--631Chr11:1269823..1269847 (25 bp)
ATGCTTATCTATGGGACTCATCGTA
LOC_Os11g03370
Os.35343.1.A1_at--1154--5191Chr11:1269889..1269913 (25 bp)
GAATTTTTGGTGCTCGATCGGCTAG
LOC_Os11g03370
Os.35343.1.A1_at--879--8291Chr11:1269908..1269932 (25 bp)
GGCTAGCTACGGCACTACTGAATTG
LOC_Os11g03370
Os.35343.1.A1_at--444--5931Chr11:1269932..1269956 (25 bp)
GAGCATGTGCCTGGATACTTTGCAT
LOC_Os11g03370
Os.35343.1.A1_at--267--10711Chr11:1269951..1269975 (25 bp)
TTGCATGGTCGTTTGGTCATCGAAT
LOC_Os11g03370
Os.35343.1.A1_at--708--9071Chr11:1270070..1270094 (25 bp)
TGCTTCGTGAGTTTCTTGCTGGTAA
LOC_Os11g03370
Os.35343.1.A1_at--851--6491Chr11:1270103..1270127 (25 bp)
GATAGATGTTCTCTTGCGGCACATA
LOC_Os11g03370
Os.35343.1.A1_at--402--3071Chr11:1270147..1270171 (25 bp)
AATACTCTAGCCTTTAATTTGGTGG
LOC_Os11g03370
Target Sequence 
GTACTGCTAGTGCTGGTAGCTTCCAGCAGCAGCCAAACTACTGCAGCTTGATCAACAAAAGCATCAGCAGCAGCAATGTC
TCCTCTTGGAATAATATGCCTCCACCTCCTCCTGTAGCTGAAGGAGGAGTCCATGGAATTGGAAGCAGCTACAGCTTGCA
GCACCAGGCAGCAATGGTGAAAGCCCTACGAGATGTCATTCGTCTCCCAAATCCTCTTGGCATGCCGCAGTACAAGTTAG
ATGATGCTTATCTATGGGACTCATCGTAATAGCTAGTGCTGCTGCTGCTGCTGCTTAATTACGTGCTGAGAATTTTTGGT
GCTCGATCGGCTAGCTACGGCACTACTGAATTGAGCATGTGCCTGGATACTTTGCATGGTCGTTTGGTCATCGAATTATT
AGGAATATACTATATAGCTATACANTCGTGCAATTTTGTTGATTGCTTTGTTGTTTAGTTTTGGTCTTCTGTACAAAGAT
CATGACATTTTGCTTCGTGAGTTTCTTGCTGGTAATGCTGATTGATAGATGTTCTCTTGCGGCACATATTTTTGGAACTT
GCTATATAATACTCTAGCCTTTAATTTGGTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.35343.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis