Browse Element(s) Details


Os.35559.1.S1_at

Description gb:AK066880.1
DB_XREF= gi:32976898
TID=Os.35559.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.35559 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013087A13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013087A13, full insert sequence.
FL= gb:AK066880.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g415906/11Glycerol-3-phosphate dehydrogenase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g41560Os.14919.1.S1_at5/115+24249285..24258176transposon protein, putative, Mutator sub-class
LOC_Os05g41560OsAffx.30013.5.S1_x_at3/115+24249285..24258176transposon protein, putative, Mutator sub-class
LOC_Os05g41560Os.56216.1.S1_at2/115+24249285..24258176transposon protein, putative, Mutator sub-class
LOC_Os05g41560Os.56292.1.S1_x_at2/115+24249285..24258176transposon protein, putative, Mutator sub-class
LOC_Os05g41560Os.56292.1.S1_at1/115+24249285..24258176transposon protein, putative, Mutator sub-class
LOC_Os05g41560OsAffx.29313.1.S1_at1/115+24249285..24258176transposon protein, putative, Mutator sub-class
LOC_Os05g41570NANA5+24259340..24259720hypothetical protein
LOC_Os05g41580Os.27028.1.A1_at2/115+24263999..24270810Calcium-transporting ATPase 4, plasma membrane-type, putative, expressed
LOC_Os05g41590Os.11570.1.S1_s_at11/115+24274702..24277906Glycerol-3-phosphate dehydrogenase, putative, expressed
LOC_Os05g41590Os.11570.1.S1_at11/115+24274702..24277906Glycerol-3-phosphate dehydrogenase, putative, expressed
LOC_Os05g41590Os.35559.1.S1_at6/115+24274702..24277906Glycerol-3-phosphate dehydrogenase, putative, expressed
LOC_Os05g41599NANA5+24279361..24279781NA
LOC_Os05g41610Os.4160.1.S1_at11/115+24288010..24291479Glucan endo-1,3-beta-glucosidase GVI precursor, putative, expressed
LOC_Os05g41620Os.14205.1.S1_at11/115+24291803..24293628expressed protein
LOC_Os05g41630OsAffx.15060.1.S1_at11/115+24293707..24294697expressed protein
LOC_Os05g41640Os.9261.1.A1_at11/115+24295444..24298321Phosphoglycerate kinase, chloroplast precursor, putative, expressed
LOC_Os05g41650NANA5+24299227..24299556hypothetical protein
LOC_Os05g41660OsAffx.4591.1.S1_at11/115+24299974..24301290ICE-like protease p20 domain containing protein, expressed
LOC_Os05g41670Os.5532.1.S1_at11/115+24301696..24304131latex-abundant protein, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006072biological_processglycerol-3-phosphate metabolism
GO:0009331cellular_componentglycerol-3-phosphate dehydrogenase complex
GO:0004367molecular_functionglycerol-3-phosphate dehydrogenase (NAD+) activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.35559.1.S1_at--304--551Chr05:24277494..24277518 (25 bp)
ATCCTAATCAAGAGGTTGGTCAGAT
LOC_Os05g41590
Os.35559.1.S1_at--46--7831Chr05:24277511..24277535 (25 bp)
GGTCAGATTACCTTTGTTGCTGTTC
LOC_Os05g41590
Os.35559.1.S1_at--912--6671Chr05:24277526..24277550 (25 bp)
GTTGCTGTTCCTGCTAGTACTAATA
LOC_Os05g41590
Os.35559.1.S1_at--1026--7011Chr05:24277556..24277580 (25 bp)
GTACAGGCTTAAGTTCTTTGCACAT
LOC_Os05g41590
Os.35559.1.S1_at--297--2831Chr05:24277566..24277590 (25 bp)
AAGTTCTTTGCACATTTCACCTGCA
LOC_Os05g41590
Os.35559.1.S1_at--728--10271Chr05:24277572..24277596 (25 bp)
TTTGCACATTTCACCTGCAGGGAGC
LOC_Os05g41590
Os.35559.1.S1_at--989--8571Chr05:24277899..24277923 (25 bp)
TGGTTTTTTATTGTCAGAGTTCCAA
NONE
Os.35559.1.S1_at--424--1311Chr05:24277914..24277938 (25 bp)
AGAGTTCCAAATAGTTTCACGGGCT
NONE
Os.35559.1.S1_at--598--4371Chr05:24277920..24277944 (25 bp)
CCAAATAGTTTCACGGGCTGATGCC
NONE
Os.35559.1.S1_at--515--6351Chr05:24277939..24277963 (25 bp)
GATGCCCCCCACATGTGTATATAAA
NONE
Os.35559.1.S1_at--990--6851Chr05:24277955..24277979 (25 bp)
GTATATAAAGTACAACCACTGTTGA
NONE
Target Sequence 
ATCCTAATCAAGAGGTTGGTCAGATTACCTTTGTTGCTGTTCCTGCTAGTACTAATATATGTGTACAGGCTTAAGTTCTT
TGCACATTTCACCTGCAGGGAGCTTGCCACTGACTCCATTCTCCAGGCAATACGAGATGAATCAATGTATGATCCACGGG
AGAGGATTGAGATGTCTCAGCGCCAGTGTCTTTACCGACCATCTCTTCTTGGCCTACCTAAAGTAGATATTACCCAGGCT
TAGATCTATTCTTTTTTTTTTTTCTGCAGATTTGTTTTGAGATTTGCAGGATTCTTTGATGTATTCTTTGCATAGTGGTC
CTCAAGATCCTTCCTTGTGTGCCAAGTGCATCTCGTGTTCGAACACTGATTCCATTCTCTACTAGAGAATTTGATAATGA
GGTGTTTTGGTTTTTTATTGTCAGAGTTCCAAATAGTTTCACGGGCTGATGCCCCCCACATGTGTATATAAAGTACAACC
ACTGTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.35559.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis