Browse Element(s) Details


Os.35688.1.S1_at

Description gb:CB654706
DB_XREF= gi:29658431
DB_XREF=OSJNEc07H03.r
CLONE=OSJNEc07H03
TID=Os.35688.1
CNT=36
FEA=FLmRNA
TIER=Stack
STK=6
UG=Os.35688 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013059O19, full insert sequence
FL= gb:AK066296.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4487011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g44830OsAffx.31479.1.S1_x_at11/1111+26622111..26628197AT hook motif-containing protein, putative, expressed
LOC_Os11g44830OsAffx.31479.4.S1_x_at9/1111+26622111..26628197AT hook motif-containing protein, putative, expressed
LOC_Os11g44840OsAffx.31479.5.S1_x_at9/1111+26629929..26634029hypothetical protein
LOC_Os11g44850OsAffx.31480.1.S1_at11/1111+26637773..26638612hypothetical protein
LOC_Os11g44860OsAffx.19376.1.S1_x_at11/1111+26642585..26646473Protein kinase domain containing protein, expressed
LOC_Os11g44870Os.35688.1.S1_at11/1111+26648502..26650903expressed protein
LOC_Os11g44880OsAffx.19377.1.S1_at11/1111+26651962..26658489kinesin motor protein, putative, expressed
LOC_Os11g44880Os.57189.1.S1_at1/1111+26651962..26658489kinesin motor protein, putative, expressed
LOC_Os11g44890OsAffx.31481.1.S1_at11/1111+26660734..26663541Zinc knuckle family protein, expressed
LOC_Os11g44900Os.49922.1.S1_at10/1111+26668274..26671116retrotransposon protein, putative, unclassified, expressed
LOC_Os11g44910Os.53980.1.S1_at11/1111+26672516..26677210ATP-dependent DNA helicase, RecQ family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.35688.1.S1_at--949--5511Chr11:26650251..26650275 (25 bp)
GAAAAGCACCAGCATGACTCAAGTT
LOC_Os11g44870
Os.35688.1.S1_at--1062--1211Chr11:26650272..26650296 (25 bp)
AGTTCAGCTCGCTTTGACTGTTTAA
LOC_Os11g44870
Os.35688.1.S1_at--671--7951Chr11:26650312..26650336 (25 bp)
GGATACCCAAGAGTTCTTACCTGAA
LOC_Os11g44870
Os.35688.1.S1_at--354--2791Chr11:26650369..26650393 (25 bp)
AAGAGGCTCAAATCCATCTCGCTAA
LOC_Os11g44870
Os.35688.1.S1_at--775--2271Chr11:26650378..26650402 (25 bp)
AAATCCATCTCGCTAAATTCAGGTG
LOC_Os11g44870
Os.35688.1.S1_at--371--3811Chr11:26650411..26650435 (25 bp)
CTCCGCTCCAGTGATTTCTCAAATA
LOC_Os11g44870
Os.35688.1.S1_at--108--471Chr11:26650439..26650463 (25 bp)
ATCTCGTTGAGCTGCTTCAGATTCA
LOC_Os11g44870
Os.35688.1.S1_at--1057--1511Chr11:26650474..26650498 (25 bp)
AGCAGTAGGGCTCTAGTTCTCCTCA
LOC_Os11g44870
Os.35688.1.S1_at--136--9551Chr11:26650485..26650509 (25 bp)
TCTAGTTCTCCTCAATTTTCTGCTT
LOC_Os11g44870
Os.35688.1.S1_at--924--6491Chr11:26650534..26650558 (25 bp)
GATAGTTGAACCAGAATCCTACCAA
LOC_Os11g44870
Os.35688.1.S1_at--564--7671Chr11:26650565..26650589 (25 bp)
GGGTTTTGCCGGGATACAACTGATA
LOC_Os11g44870
Target Sequence 
GAAAAGCACCAGCATGACTCAAGTTCAGCTCGCTTTGACTGTTTAAGTCAAGAGTTAAAAAGGATACCCAAGAGTTCTTA
CCTGAATAGAGAAAATGTAAAAACCATGAGTCTAAGTGAAGAGGCTCAAATCCATCTCGCTAAATTCAGGTGGGGAAGCT
CTCCGCTCCAGTGATTTCTCAAATAAAAATCTCGTTGAGCTGCTTCAGATTCAGAGTTATATGAGCAGTAGGGCTCTAGT
TCTCCTCAATTTTCTGCTTCATATTCAGAGTTAAATATTACAAGATAGTTGAACCAGAATCCTACCAAATTTNTGGGTTT
TGCCGGGATACAACTGATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.35688.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis