Browse Element(s) Details


OsAffx.19376.1.S1_x_at

Description tigr:9639.m04168
TID=OsAffx.19376.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Protein kinase domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4486011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g44830OsAffx.31479.1.S1_x_at11/1111+26622111..26628197AT hook motif-containing protein, putative, expressed
LOC_Os11g44830OsAffx.31479.4.S1_x_at9/1111+26622111..26628197AT hook motif-containing protein, putative, expressed
LOC_Os11g44840OsAffx.31479.5.S1_x_at9/1111+26629929..26634029hypothetical protein
LOC_Os11g44850OsAffx.31480.1.S1_at11/1111+26637773..26638612hypothetical protein
LOC_Os11g44860OsAffx.19376.1.S1_x_at11/1111+26642585..26646473Protein kinase domain containing protein, expressed
LOC_Os11g44870Os.35688.1.S1_at11/1111+26648502..26650903expressed protein
LOC_Os11g44880OsAffx.19377.1.S1_at11/1111+26651962..26658489kinesin motor protein, putative, expressed
LOC_Os11g44880Os.57189.1.S1_at1/1111+26651962..26658489kinesin motor protein, putative, expressed
LOC_Os11g44890OsAffx.31481.1.S1_at11/1111+26660734..26663541Zinc knuckle family protein, expressed
LOC_Os11g44900Os.49922.1.S1_at10/1111+26668274..26671116retrotransposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0004672molecular_functionprotein kinase activity
GO:0005529molecular_functionsugar binding
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19376.1.S1_x_at--306--4711Chr11:26645974..26645998 (25 bp)
GCGGCGCTGCTCTGCATCCAGGAGA
LOC_Os11g44860
OsAffx.19376.1.S1_x_at--876--591Chr11:26646019..26646043 (25 bp)
ATGCCGGAGGTTGTCCACATGCTGC
LOC_Os11g44860
OsAffx.19376.1.S1_x_at--90--592Chr11:26646112..26646136 (25 bp)
ATCCACGGCGGCGAGACGAGCAGCT
LOC_Os11g44860
OsAffx.19376.1.S1_x_at--1110--5771Chr11:26646126..26646150 (25 bp)
GACGAGCAGCTGATTGATGGATTGT
LOC_Os11g44860
OsAffx.19376.1.S1_x_at--617--2491Chr11:26646193..26646217 (25 bp)
AACAGTTCAGAGTTTTTCAGACGAA
LOC_Os11g44860
OsAffx.19376.1.S1_x_at--163--5771Chr11:26646212..26646236 (25 bp)
GACGAACACAAGAGCACTGAACTGA
LOC_Os11g44860
OsAffx.19376.1.S1_x_at--151--8592Chr11:26646290..26646314 (25 bp)
TGGGTTTTCACTCATTTTCACTGGT
LOC_Os11g44860
OsAffx.19376.1.S1_x_at--690--10491Chr11:26646306..26646330 (25 bp)
TTCACTGGTGTAAACTAATGCCGTC
LOC_Os11g44860
OsAffx.19376.1.S1_x_at--1008--2531Chr11:26646318..26646342 (25 bp)
AACTAATGCCGTCAGGTGAAATGCT
LOC_Os11g44860
OsAffx.19376.1.S1_x_at--799--5571Chr11:26646353..26646377 (25 bp)
GAAATCCTTTTGTAGTTGCAGTAAT
LOC_Os11g44860
OsAffx.19376.1.S1_x_at--817--9011Chr11:26646404..26646428 (25 bp)
TGCACATTGCAAACGTTTCAAGTAC
LOC_Os11g44860
Target Sequence 
GCGGCGCTGCTCTGCATCCAGGAGAGCCCCAAGCGGCGACCCGCCATGCCGGAGGTTGTCCACATGCTGCGCCCCAGGGG
GAAGGCCACGCCGCCGCTGCCCGGCCGGTCTCGATTCACCGCGGCGAGGGCGAGCTCGATCCACGGCGGCGAGACGAGCA
GCTGATTGATGGATTGTTCATCATTGGAAGAGAGCAATTTGTAGTATTCATGAACTGAAAACAGTTCAGAGTTTTTCAGA
CGAACACAAGAGCACTGAACTGAATAGCTGAAGAGGTTCAGGAATGATCAAATCCTGATATATGGAAACATTTTGGTGGG
TTTTCACTCATTTTCACTGGTGTAAACTAATGCCGTCAGGTGAAATGCTGATACGAAATGAAATCCTTTTGTAGTTGCAG
TAATGAATTCCTTTTTACCATGTAAAGATTTGCACATTGCAAACGTTTCAAGTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19376.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis