Browse Element(s) Details


Os.35815.1.S1_at

Description gb:AK065672.1
DB_XREF= gi:32975690
TID=Os.35815.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.35815 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0439B06.15 (P0439B06.15), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013039E22, full insert sequence.
FL= gb:AK065672.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0208011/11peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g02050Os.49998.1.S1_at11/111+558890..568894Phosphoenolpyruvate carboxylase 4, putative, expressed
LOC_Os01g02050Os.33406.1.A1_x_at11/111+558890..568894Phosphoenolpyruvate carboxylase 4, putative, expressed
LOC_Os01g02060Os.12560.1.S1_s_at11/111+573291..576371Leucine Rich Repeat family protein, expressed
LOC_Os01g02070OsAffx.22936.1.S1_at9/111+582765..583247pectinesterase inhibitor domain containing protein
LOC_Os01g02080Os.35815.1.S1_at11/111+583225..584558peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein, putative, expressed
LOC_Os01g02090Os.1644.1.S1_at11/111+585671..590539expressed protein
LOC_Os01g02100Os.35391.2.S1_x_at11/111+595092..598259hAT family dimerisation domain containing protein, expressed
LOC_Os01g02100Os.35391.1.S1_at11/111+595092..598259hAT family dimerisation domain containing protein, expressed
LOC_Os01g02110Os.30617.1.S1_at11/111+600445..602445Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g02120Os.29115.1.S1_at11/111+609366..612433MOTHER of FT and TF1 protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
GO:0009543cellular_componentthylakoid lumen (sensu Viridiplantae)
GO:0003755molecular_functionpeptidyl-prolyl cis-trans isomerase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.35815.1.S1_at--226--9171Chr01:583855..583879 (25 bp)
TGCCCAACGGCACCGAGTTCGTCAT
LOC_Os01g02080
Os.35815.1.S1_at--901--1931Chr01:583771..583795 (25 bp)
ACGGCATGGACGTCCTCGGCAAGAT
LOC_Os01g02080
Os.35815.1.S1_at--916--7291Chr01:583739..583763 (25 bp)
GTGCCCACCGTCAAGGATAACACTG
LOC_Os01g02080
Os.35815.1.S1_at--922--1971Chr01:583723..583742 (20 bp)
ACTGCCTCTCCATACTTCAGAGTAG
LOC_Os01g02080
Os.35815.1.S1_at--478--3651Chr01:583571..583592 (22 bp)
CTTCAGAGTAGCCAAGTTGATCGGG
LOC_Os01g02080
Os.35815.1.S1_at--771--1371Chr01:583526..583550 (25 bp)
AGAGCGAGGGTTCAACCGCCCATAC
LOC_Os01g02080
Os.35815.1.S1_at--752--3531Chr01:583506..583530 (25 bp)
CATACACCAAGATCCTAATCACCAA
LOC_Os01g02080
Os.35815.1.S1_at--810--31Chr01:583482..583506 (25 bp)
ATTGTGGAGTCATTGAACAGCAGCA
LOC_Os01g02080
Os.35815.1.S1_at--432--3451Chr01:583453..583477 (25 bp)
CAGTAGAGTGCTTTGTTTCTGCCTT
LOC_Os01g02080
Os.35815.1.S1_at--55--2611Chr01:583291..583315 (25 bp)
AACGCATGTCACACTGTGCTTACAG
LOC_Os01g02080
Os.35815.1.S1_at--169--8691Chr01:583277..583301 (25 bp)
TGTGCTTACAGAACACCAACTTATG
LOC_Os01g02080
Target Sequence 
TGCCCAACGGCACCGAGTTCGTCATCACCACCGGCGACGCGCCGGAGCTGGACGCGTCGGCGCTGGTGGTCGGGAGGGTC
GTGGACGGCATGGACGTCCTCGGCAAGATCGCAGCCGTGCCCACCGTCAAGGATAACACTGCCTCTCCATACTTCAGAGT
AGCCAAGTTGATCGGGGACAAGAGAGCAGTGGTTGCAGAGCGAGGGTTCAACCGCCCATACACCAAGATCCTAATCACCA
ATTGTGGAGTCATTGAACAGCAGCAGGAGCAGTAGAGTGCTTTGTTTCTGCCTTGCCTTTCATGTCTCTAGTTTGTGCAA
AGGGTAATTATTATTGGAACTCTGTTTGCAAGAGNNTTTTGATTACTCATGGACTGATATAGGCNATGGAGAGGATTAAA
AAGGATTGTGAAGAGATGAGAGTCTTTGTANAACGCATGTCACACTGTGCTTACAGAACACCAACTTATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.35815.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis