Browse Element(s) Details


Os.36267.1.S2_s_at

Description gb:CB644176
DB_XREF= gi:29639167
DB_XREF=OSJNEb05E07.r
CLONE=OSJNEb05E07
TID=Os.36267.1
CNT=9
FEA=FLmRNA
TIER=ConsEnd
STK=2
UG=Os.36267 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) contains ESTs AU070849(R10361),D23619(C3104)~similar to Arabidopsis thaliana chromosome 5, MAF19.15~unknown protein (P0585H11.30), mRNA
FL= gb:AK063942.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0188011/11Leo1, expressed
LOC_Os12g3897011/11Leo1, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g01850Os.21876.1.S1_at11/117+504590..509557NLI interacting factor-like phosphatase family protein, expressed
LOC_Os07g01850OsAffx.5177.1.S1_at8/117+504590..509557NLI interacting factor-like phosphatase family protein, expressed
LOC_Os07g01860Os.38052.1.S1_at11/117+514165..520238expressed protein
LOC_Os07g01870Os.4714.1.S1_at11/117+521662..52406460S ribosomal protein L13a-2, putative, expressed
LOC_Os07g01870Os.4714.2.S1_x_at10/117+521662..52406460S ribosomal protein L13a-2, putative, expressed
LOC_Os07g01870Os.4714.2.S1_at7/117+521662..52406460S ribosomal protein L13a-2, putative, expressed
LOC_Os07g01880Os.36267.1.S2_s_at11/117+524570..532642Leo1, expressed
LOC_Os07g01880Os.36267.1.S1_s_at10/117+524570..532642Leo1, expressed
LOC_Os07g01880Os.11217.1.S1_at1/117+524570..532642Leo1, expressed
LOC_Os07g01890Os.23660.1.S1_at11/117+533901..536093expressed protein
LOC_Os07g01890Os.23660.1.S2_at11/117+533901..536093expressed protein
LOC_Os07g01900Os.44557.1.S1_at11/117+536280..538081expressed protein
LOC_Os07g01910Os.5376.1.S1_at11/117+554328..556672expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009910biological_processnegative regulation of flower development
GO:0010048biological_processvernalization response
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.36267.1.S2_s_at--561--6192Chr12:23933207..23933231 (25 bp)
GAGGAACCTGACCATCAATATGGTT
LOC_Os12g38970
Os.36267.1.S2_s_at--367--372Chr12:23933220..23933244 (25 bp)
ATCAATATGGTTCTCGCCGAATGCC
LOC_Os12g38970
Os.36267.1.S2_s_at--14--832Chr12:23933226..23933250 (25 bp)
ATGGTTCTCGCCGAATGCCAGCACG
LOC_Os12g38970
Os.36267.1.S2_s_at--478--4112Chr12:23933237..23933261 (25 bp)
CGAATGCCAGCACGTAGTCGTTTTG
LOC_Os12g38970
Os.36267.1.S2_s_at--1054--4732Chr12:23933288..23933312 (25 bp)
GCTGAGAGGCGCATAGTTAGTGCAA
LOC_Os12g38970
Os.36267.1.S2_s_at--445--10072Chr12:23933305..23933417 (25 bp)
TAGTGCAAAGAAGTCAAGTATGGGC
LOC_Os12g38970
Os.36267.1.S2_s_at--279--6932Chr12:23933410..23933434 (25 bp)
GTATGGGCAGAAACATTCCTCGCAA
LOC_Os12g38970
Os.36267.1.S2_s_at--999--8252Chr12:23933415..23933439 (25 bp)
GGCAGAAACATTCCTCGCAAACCAT
LOC_Os12g38970
Os.36267.1.S2_s_at--20--992Chr12:23933519..23933543 (25 bp)
AGGAGAGGATATTGAGCACTCACCA
LOC_Os12g38970
Os.36267.1.S2_s_at--715--212Chr12:23933527..23933551 (25 bp)
ATATTGAGCACTCACCAACCCAGGG
LOC_Os12g38970
Os.36267.1.S2_s_at--976--5332Chr12:23934170..23934194 (25 bp)
GAACCAAAACGGAGGAGAGAATCTG
LOC_Os12g38970
Target Sequence 
GAGGAACCTGACCATCAATATGGTTCTCGCCGAATGCCAGCACGTAGTCGTTTTGAGGATGAACTGGAGGCTGAAGCCCT
AGCTGAGAGGCGCATAGTTAGTGCAAAGAAGTCAAGTATGGGCAGAAACATTCCTCGCAAACCATCATTTCCTGCTCGTC
CGCCTAGACGACAGGCAAATGAATATTCTGAGAGTGAAAGGGAGGAGTCAGAGTATGAAACTGAAGGAGAGGATATTGAG
CACTCACCAACCCAGGGGAGGGAAGATGAGCTTGATGAAGAAGATGAATATGAGGAAGATGTGGAAGAAGAAGCAGCCAT
GTCAGATGAAGAAATTGAGGAACCAAAACGGAGGAGAGAATCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.36267.1.S2_s_at     

Putative homologies in rice

Putative homologies in arabidopsis