Browse Element(s) Details


Os.36426.1.S1_at

Description gb:AK063447.1
DB_XREF= gi:32973465
TID=Os.36426.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.36426 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) PPR-repeat protein -like (P0691E06.21), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-115-F08, full insert sequence.
FL= gb:AK063447.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5863011/11pentatricopeptide, putative, expressed
LOC_Os05g152701/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g58580Os.8591.1.S1_at11/111+34195990..34198683latex-abundant protein, putative, expressed
LOC_Os01g58590NANA1+34203653..34205684hypothetical protein
LOC_Os01g58600Os.22639.1.S1_at4/111+34208929..34209138hypothetical protein
LOC_Os01g58610OsAffx.11650.1.S1_at11/111+34211768..34214261Phosphoglycerate kinase, chloroplast precursor, putative, expressed
LOC_Os01g58620Os.7800.1.S1_at11/111+34216946..34218575expressed protein
LOC_Os01g58630Os.36426.1.S1_at11/111+34220608..34222844pentatricopeptide, putative, expressed
LOC_Os01g58640Os.11682.1.S1_at11/111+34224228..34231210Ser/Thr protein phosphatase family protein, expressed
LOC_Os01g58650OsAffx.21682.1.S1_at11/111+34233218..34236440Protease inhibitor/seed storage/LTP family protein
LOC_Os01g58660Os.16752.1.S1_at11/111+34238146..34238836expressed protein
LOC_Os01g58670Os.55436.1.S1_at11/111+34241055..34245283hypothetical protein
LOC_Os01g58670Os.16744.1.S1_at7/111+34241055..34245283hypothetical protein
LOC_Os01g58680Os.33192.1.S1_at10/111+34246333..34251495Apurinic endonuclease-redox protein, putative, expressed
LOC_Os01g58680OsAffx.30558.1.S1_at1/111+34246333..34251495Apurinic endonuclease-redox protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.36426.1.S1_at--638--3671Chr01:34222166..34222190 (25 bp)
CTTTTTTCACTGCTGCGTTGAGTAT
LOC_Os01g58630
Os.36426.1.S1_at--1002--811Chr01:34222471..34222495 (25 bp)
ATGGTTTTCATGACTTCTTCCTAGC
LOC_Os01g58630
Os.36426.1.S1_at--1069--9572Chr01:34222486..34222510 (25 bp)
TCTTCCTAGCTGATTTGGCTTTCCA
LOC_Os01g58630
Os.36426.1.S1_at--299--10871Chr01:34222500..34222524 (25 bp)
TTGGCTTTCCAGACACAACCGAAGA
LOC_Os01g58630
Os.36426.1.S1_at--975--6071Chr01:34222538..34222562 (25 bp)
GAGTTTCAGCTCCTTACTTTCATTA
LOC_Os01g58630
Os.36426.1.S1_at--1037--9211Chr01:34222585..34222609 (25 bp)
TCCAGTCTGTTTTGTCGCTAACAGT
LOC_Os01g58630
Os.36426.1.S1_at--1015--9811Chr01:34222603..34222627 (25 bp)
TAACAGTTTACAAGTCCTGCATCTT
LOC_Os01g58630
Os.36426.1.S1_at--1092--9011Chr01:34222638..34222662 (25 bp)
TGCAAGCTTGTATCCAGGTGACATT
LOC_Os01g58630
Os.36426.1.S1_at--668--2451Chr01:34222702..34222726 (25 bp)
AAAATATTCCTGTTGTGCTCATTGG
LOC_Os01g58630
Os.36426.1.S1_at--1053--6451Chr01:34222739..34222763 (25 bp)
GATCAATGTCCTGGAGTTGCTGTAC
LOC_Os01g58630
Os.36426.1.S1_at--1027--6671Chr01:34222754..34222778 (25 bp)
GTTGCTGTACATTGCTATATCACTT
LOC_Os01g58630
Target Sequence 
CTTTTTTCACTGCTGCGTTGAGTATTTGAGATAATCGATGATATTTGGATATGGTTGATCAGGATGATAAACTGGCATAT
TAGAAGATCATCTGTTTGATGCATGGAGATTACTCAGGTGCATATGAATATATGATCAATTGATGCTTCAAACAAACTAA
TGAGGGATAACAAAGGATATCTCTGAGTAATGGTTTTCATGACTTCTTCCTAGCTGATTTGGCTTTCCAGACACAACCGA
AGACAGCTCAACAATTGAGTTTCAGCTCCTTACTTTCATTAAAACTCTACAGTTGATCAATTATCCAGTCTGTTTTGTCG
CTAACAGTTTACAAGTCCTGCATCTTCAATAAATTCTGCAAGCTTGTATCCAGGTGACATTTTTCGTAGATTGCAGTTTT
TACATGTTATACGGCAAAAAAAATATTCCTGTTGTGCTCATTGGAAATTCTTTTAGGATCAATGTCCTGGAGTTGCTGTA
CATTGCTATATCACTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.36426.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis