Browse Element(s) Details


Os.36453.1.S1_at

Description gb:AK063360.1
DB_XREF= gi:32973378
TID=Os.36453.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.36453 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0042A10.9 (P0042A10.9), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-114-C12, full insert sequence.
FL= gb:AK063360.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g156392/11expressed protein
LOC_Os10g043421/11disease resistance protein RPM1 homolog, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g15590OsAffx.30125.1.S1_at11/119+9517483..9523582F-box domain containing protein, expressed
LOC_Os09g15590OsAffx.8513.1.S1_s_at1/119+9517483..9523582F-box domain containing protein, expressed
LOC_Os09g15600OsAffx.13016.2.S1_at10/119+9525904..9527944transposon protein, putative, unclassified
LOC_Os09g15610Os.14491.2.S1_x_at4/119+9529692..9532617transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g15610Os.47463.1.S1_x_at4/119+9529692..9532617transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g15620NANA9+9532863..9534256transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g15630Os.27037.1.A1_at1/119+9535282..9538504transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g15639Os.52634.2.S1_x_at11/119+9543293..9545477expressed protein
LOC_Os09g15639Os.36453.1.S1_at2/119+9543293..9545477expressed protein
LOC_Os09g15650NANA9+9549098..9550318hypothetical protein
LOC_Os09g15660OsAffx.17721.1.S1_at11/119+9553910..9555217hypothetical protein
LOC_Os09g15670Os.9022.1.S1_at11/119+9566470..9567889Protein phosphatase 2C, putative, expressed
LOC_Os09g15680Os.32340.1.S1_at11/119+9569652..9570654hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009613biological_processresponse to pest, pathogen or parasite
GO:0009626biological_processhypersensitive response
GO:0000166molecular_functionnucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.36453.1.S1_at--551--8391Chr01:30598010..30598034 (25 bp)
GGCGCACTAGCGACGGCAAGCGTCT
NONE
Os.36453.1.S1_at--602--8231Chr01:30598024..30598048 (25 bp)
GGCAAGCGTCTATGCGGCCGGACCT
NONE
Os.36453.1.S1_at--250--7671Chr01:30598350..30598374 (25 bp)
GGGATTCCGGGAAATTTCAATCTTG
NONE
Os.36453.1.S1_at--497--104911Chr10:2028792..2028816 (25 bp)
TTCAATCTTGTTTATTCCCTTTTGC
LOC_Os10g04342
Os.36453.1.S1_at--837--6814Chr01:30598374..30598398 (25 bp)
GTTTATTCCCTTTTGCTTAACAGTG
NONE
Os.36453.1.S1_at--503--9734Chr09:9543880..9543905 (25 bp)
TCAATCTAGTTTATCCCCTGTTTTC
LOC_Os09g15639
Os.36453.1.S1_at--521--9294Chr01:30598429..30598453 (25 bp)
TCCCCAATTTACTTCTTAATCCACT
NONE
Os.36453.1.S1_at--126--3711NONE
CTACGGTTTATGAGTTGGGAACAAT
NONE
Os.36453.1.S1_at--817--2991NONE
AATGAGAGTCTCAATCTGGTTTATC
NONE
Os.36453.1.S1_at--761--3052Chr01:30598507..30598566 (25 bp)
AATCTGGTTTATCTCATTCGCTCTC
NONE
Os.36453.1.S1_at--1136--71NONE
ATTCGCTCTCCGCTTAGTAAAATTC
NONE
Target Sequence 
GGCGCACTAGCGACGGCAAGCGTCTATGCGGCCGGACCTCGTCAGCGGGGGTGCGGAGCCCGAAGGCAGCCGCCAAGCCG
ACGCTTCCCGTCCCCGGTGAGGGACGGTGGAGAGACAAGCTCCAAGGCGGCGCGCGCACGGCGGTCAACCGGCGCGGCCC
CGAGGAGACCGGAGAGCTCCGGCAAGCTTAGGGGGTCTAAATCCGGTAATTAACCCGAACTCAAACCTAATTTTGACTTG
AATTTGGATTTAATTCTGGTATTTGNGNACTTANGGTTCTTNCCCCCCAAAAATTANGGTTCCTCATTTGGGGATTTTAN
GCCGATTGGATCCGGCTTATTGGGGATTCCGGGAAATTTCAATCTTGTTTATTCCCTTTTGCTTAACAGTGGGGAATTTC
AATCTAGTTTATCCCCTGTTTTCCCCAATTTACTTCTTAATCCACTGATCTTATATGATAAGAACCTACGGTTTATGAGT
TGGGAACAATGAGAGTCTCAATCTGGTTTATCTCATTCGCTCTCCGCTTAGTAAAATTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.36453.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis