Browse Element(s) Details


Os.36698.1.S1_at

Description gb:AK062857.1
DB_XREF= gi:32972875
TID=Os.36698.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.36698 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-108-A10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-108-A10, full insert sequence.
FL= gb:AK062857.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3551011/11CENP-E-like kinetochore protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g35470NANA4+21396433..21398027retrotransposon protein, putative, unclassified
LOC_Os04g35480Os.11755.1.S1_at11/114+21404275..21407936MiaB-like tRNA modifying enzyme, archaeal-type family protein, expressed
LOC_Os04g35490OsAffx.26343.1.S1_x_at11/114+21408362..21410433expressed protein
LOC_Os04g35490Os.36307.1.S1_at11/114+21408362..21410433expressed protein
LOC_Os04g35500NANA4+21413253..21414522ZF-HD protein dimerisation region containing protein, expressed
LOC_Os04g35510Os.36698.1.S1_at11/114+21422013..21424151CENP-E-like kinetochore protein, putative, expressed
LOC_Os04g35510OsAffx.14157.1.S1_at11/114+21422013..21424151CENP-E-like kinetochore protein, putative, expressed
LOC_Os04g35520Os.26502.1.S1_a_at11/114+21435571..21439929L-ascorbate peroxidase 7, chloroplast precursor, putative, expressed
LOC_Os04g35530OsAffx.14158.1.S1_at11/114+21442184..21446637hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0003777molecular_functionmicrotubule motor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.36698.1.S1_at--1047--1651Chr04:21422381..21422405 (25 bp)
AGCCGAAGCAGCACTGACGATTCTA
LOC_Os04g35510
Os.36698.1.S1_at--837--791Chr04:21422321..21422345 (25 bp)
ATGTGGTTATGCCTTCTGACTGTCA
LOC_Os04g35510
Os.36698.1.S1_at--108--1671Chr04:21422297..21422321 (25 bp)
AGCCCTGGTGCTAATCCGCAGTATG
LOC_Os04g35510
Os.36698.1.S1_at--1075--6391Chr04:21422235..21422259 (25 bp)
GATCGTAGCACGGTTACTGTATTTA
LOC_Os04g35510
Os.36698.1.S1_at--367--8131Chr04:21422205..21422229 (25 bp)
GGACTTAGGTACGATTGACGCCCAA
LOC_Os04g35510
Os.36698.1.S1_at--375--2951Chr04:21422182..21422206 (25 bp)
AAGGCGTGTAGCCAAGCCGTACATC
LOC_Os04g35510
Os.36698.1.S1_at--139--3251Chr04:21422170..21422194 (25 bp)
CAAGCCGTACATCTCCTTGTGGAGA
LOC_Os04g35510
Os.36698.1.S1_at--867--4291Chr04:21422156..21422180 (25 bp)
CCTTGTGGAGACAGCCGAACGGACT
LOC_Os04g35510
Os.36698.1.S1_at--1103--10331Chr04:21422120..21422144 (25 bp)
TTTTTTCGCGTACACTCGTAGTTGT
LOC_Os04g35510
Os.36698.1.S1_at--537--3331Chr04:21422108..21422132 (25 bp)
CACTCGTAGTTGTAGCCTGTAGCAA
LOC_Os04g35510
Os.36698.1.S1_at--735--7011Chr04:21422065..21422089 (25 bp)
GTACTAGTAGTCGTCTTGGTGTTTA
LOC_Os04g35510
Target Sequence 
AGCCGAAGCAGCACTGACGATTCTAGTACAACGGAGTTTAAGCAATCTNNNNNNNNNNNCATGGAAGTGGAATGTGGTTA
TGCCTTCTGACTGTCAGCCCTGGTGCTAATCCGCAGTATGCTGCCCCCTTCTTGTACAGCTTCATTTGACTTAGGAAGAT
CGTAGCACGGTTACTGTATTTACTTAGGGACTTAGGTACGATTGACGCCCAAGGCGTGTAGCCAAGCCGTACATCTCCTT
GTGGAGACAGCCGAACGGACTGTACCGTGGTTTTTTTTCGCGTACACTCGTAGTTGTAGCCTGTAGCAAAGCTGCAGTTT
AGTACTAGTACTAGTAGTCGTCTTGGTGTTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.36698.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis