Browse Element(s) Details


Os.36834.1.S1_at

Description gb:AK062582.1
DB_XREF= gi:32972600
TID=Os.36834.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.36834 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-100-C11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-100-C11, full insert sequence.
FL= gb:AK062582.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5483010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g54790Os.28255.1.S1_at11/114+32355340..32362610ABC1 family protein, expressed
LOC_Os04g54800Os.35335.1.A1_s_at11/114+32363062..32366659Shikimate kinase, chloroplast precursor, putative, expressed
LOC_Os04g54810Os.48101.1.S1_at7/114+32370051..32376828Beta-D-xylosidase, putative, expressed
LOC_Os04g54820Os.27125.1.A1_at11/114+32381297..32384241Programmed cell death protein 2, C-terminal domain containing protein, expressed
LOC_Os04g54830Os.36834.1.S1_at10/114+32386034..32389565expressed protein
LOC_Os04g54840Os.48809.1.S1_at10/114+32390816..32399859DNA-directed RNA polymerase, putative, expressed
LOC_Os04g54850Os.351.1.S1_at10/114+32406740..32410067Pectinesterase family protein, expressed
LOC_Os04g54860Os.53282.1.S1_at11/114+32413212..32414887Glutaredoxin family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.36834.1.S1_at--609--2851Chr04:32388990..32389014 (25 bp)
AAGTGCCTGAATCTGAGCACAGCAG
LOC_Os04g54830
Os.36834.1.S1_at--893--8271Chr04:32389016..32389040 (25 bp)
GGCATGATCAGGAACAGCCTCTTCA
LOC_Os04g54830
Os.36834.1.S1_at--253--2491Chr04:32389028..32389052 (25 bp)
AACAGCCTCTTCAGCAAGATGGTCT
LOC_Os04g54830
Os.36834.1.S1_at--989--2791Chr04:32389043..32389067 (25 bp)
AAGATGGTCTCTGCATCCTCGATGA
LOC_Os04g54830
Os.36834.1.S1_at--140--5751Chr04:32389066..32389090 (25 bp)
GACGGCTGGTGCTAGCATGGATCAT
LOC_Os04g54830
Os.36834.1.S1_at--27--6331NONE
GATGCGGAACGGCAAGCTCCTGATA
NONE
Os.36834.1.S1_at--1153--3851Chr04:32389166..32389190 (25 bp)
CTGATACCGCATCAGGTCCTGGTTC
LOC_Os04g54830
Os.36834.1.S1_at--178--7911Chr04:32389186..32389210 (25 bp)
GGTTCCTGGTTCAATGAGGCCATCT
LOC_Os04g54830
Os.36834.1.S1_at--221--431Chr04:32389207..32389231 (25 bp)
ATCTTCTTCGCATGGCAAAGGTCAA
LOC_Os04g54830
Os.36834.1.S1_at--901--6531Chr04:32389428..32389452 (25 bp)
GATTTCAGATCACCATTGCACTATG
LOC_Os04g54830
Os.36834.1.S1_at--828--151Chr04:32389491..32389515 (25 bp)
ATTATGTGGCTTAGGCCTTGTATAA
LOC_Os04g54830
Target Sequence 
AAGTGCCTGAATCTGAGCACAGCAGAGGCATGATCAGGAACAGCCTCTTCAGCAAGATGGTCTCTGCATCCTCGATGACG
GCTGGTGCTAGCATGGATCATGCCATCTCTTCTTCTCTCCCTGGTGCCTCGTCGGATCGCGGTGAGTCCTTGGAAGAGAT
GCGGAACGGCAAGCTCCTGATACCGCATCAGGTCCTGGTTCCTGGTTCAATGAGGCCATCTTCTTCGCATGGCAAAGGTC
AAGAGNACGGAGGGAGCCAGGAGCAGCAGTGCTTCGGGTTCGTCGTGCCGGAGGGGAGGGTTCATGGTGGGGGCCNTGAT
GTCCATNCTTGGAGCTNGAGGCAATCTTGACGATCCGANGGACTGAATTTTGCTGAAAATGTTAAAGTTGCAGCTATTTT
TATGCTGTCATTTATGATTTCTGCATCTAGAATCNATAAGATTTCAGATCACCATTGCACTATGCTGTCAAGCATGACTG
CTTGATCGAAANTGANTTNTGAATTATGTGGCTTAGGCCTTGTATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.36834.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis