Browse Element(s) Details


Os.37075.1.S1_at

Description gb:AK061010.1
DB_XREF= gi:32971028
TID=Os.37075.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.37075 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-204-A12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-204-A12, full insert sequence.
FL= gb:AK061010.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2828011/112-Hydroxyisoflavanone dehydratase, putative, expressed
LOC_Os03g251401/11Peptidylprolyl isomerase PASTICCINO1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g28230Os.52216.1.S1_at11/119+17144775..171460572-Hydroxyisoflavanone dehydratase, putative, expressed
LOC_Os09g28240OsAffx.6426.1.S1_at11/119+17148190..17149367hypothetical protein
LOC_Os09g28240OsAffx.22046.3.S1_x_at1/119+17148190..17149367hypothetical protein
LOC_Os09g28240OsAffx.22046.3.S1_at1/119+17148190..17149367hypothetical protein
LOC_Os09g28250NANA9+17153074..17153601hypothetical protein
LOC_Os09g28260NANA9+17157640..17163352retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g28270NANA9+17166042..17167607hypothetical protein
LOC_Os09g28280Os.37075.1.S1_at11/119+17170659..171718062-Hydroxyisoflavanone dehydratase, putative, expressed
LOC_Os09g28290OsAffx.6428.1.S1_at11/119+17174189..17174891hypothetical protein
LOC_Os09g28300Os.21902.1.S1_at11/119+17181866..17187377Remorin, C-terminal region family protein, expressed
LOC_Os09g28310Os.15711.1.S1_at11/119+17188975..17193011bZIP transcription factor family protein, expressed
LOC_Os09g28320OsAffx.30064.1.S1_at11/119+17195184..17196285hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009611biological_processresponse to wounding
GO:0009735biological_processresponse to cytokinin stimulus
GO:0009790biological_processembryonic development
GO:0009826biological_processunidimensional cell growth
GO:0030154biological_processcell differentiation
GO:0048364biological_processroot development
GO:0048366biological_processleaf development
GO:0005634cellular_componentnucleus
GO:0005886cellular_componentplasma membrane
GO:0003755molecular_functionpeptidyl-prolyl cis-trans isomerase activity
GO:0005516molecular_functioncalmodulin binding
GO:0005528molecular_functionFK506 binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37075.1.S1_at--222--3931Chr09:17171166..17171190 (25 bp)
CGGCGCGCATAGAGGGCACAATCTT
LOC_Os09g28280
Os.37075.1.S1_at--823--4231Chr09:17171098..17171122 (25 bp)
CCGGAGGAATTCTGGGAAAGCGTCA
LOC_Os09g28280
Os.37075.1.S1_at--620--1331Chr09:17171070..17171094 (25 bp)
AGAGGTGGTCGATCATCTTCCCCGA
LOC_Os09g28280
Os.37075.1.S1_at--1157--9411Chr09:17170945..17170969 (25 bp)
TCGGAGGACCCGATAAGACCAAGGG
LOC_Os09g28280
Os.37075.1.S1_at--1029--5811Chr09:17170929..17170953 (25 bp)
GACCAAGGGAACGTGCGTACTACGA
LOC_Os09g28280
Os.37075.1.S1_at--959--3492Chr11:13491550..13491570 (21 bp)
CATGGATCGAGTGATTGCTTTCCTT
NONE
Os.37075.1.S1_at--264--9051Chr09:17170781..17170805 (25 bp)
TGCTTTCCTTGCTGGCCATTAACTG
LOC_Os09g28280
Os.37075.1.S1_at--666--10711Chr09:17170773..17170797 (25 bp)
TTGCTGGCCATTAACTGTACTCCCA
LOC_Os09g28280
Os.37075.1.S1_at--758--10211Chr09:17170730..17170754 (25 bp)
TATTAGTCATCCGTACTTCTCTGCA
LOC_Os09g28280
Os.37075.1.S1_at--388--9892Chr03:14345141..14345160 (20 bp)
TACTTCTCTGCATCGTGTCATCGTG
LOC_Os03g25140
Os.37075.1.S1_at--73--511Chr09:17170706..17170730 (25 bp)
ATCGTGTCATCGTGTCCACGAATAA
LOC_Os09g28280
Target Sequence 
CGGCGCGCATAGAGGGCACAATCTTGCTCCACCCTTCGTTCTGCGGCGAGACGAGGATGGAAGGGGAGCCGGAGGAATTC
TGGGAAAGCGTCAAGAAGAGGTGGTCGATCATCTTCCCCGACGCGAAGGGCGGGCTGGACGATCCGCGGATGAACCCCNT
GGCGGCCGGCGCGCCGAGCCTGACGAAGCTGGCGTGCGAGAGGATGCTGGTCTGCGCGGNGTCGGAGGACCCGATAAGAC
CAAGGGAACGTGCGTACTACGACGCCGTGAAGCGAAGTGGGTGGGGCGGAGAGGTGGATTGGTTCGAGTCAGAAGGCGAG
GGCCACGCCTTCTTCGTCCGCAAGTACGGCAGCAGCAAGGCCGTCAAGCTCATGGATCGAGTGATTGCTTTCCTTGCTGG
CCATTAACTGTACTCCCAAGAGAAATATTATCGCTATATTAGTCATCCGTACTTCTCTGCATCGTGTCATCGTGTCCACG
AATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37075.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis