Browse Element(s) Details

Os.37103.1.S1_at

Description

gb:AK060684.1
DB_XREF= gi:32970702
TID=Os.37103.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.37103 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative myb-related protein (P0491F11.29), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-029-F12, full insert sequence.
FL= gb:AK060684.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os01g65370	11/11	Myb-like DNA-binding domain containing protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os01g65340	OsAffx.9633.1.S1_at	11/11	1	+	38237371..38238205	hypothetical protein
LOC_Os01g65350	Os.24883.1.S1_s_at	11/11	1	+	38241611..38245814	deoxynucleoside kinase family, putative, expressed
LOC_Os01g65350	Os.54011.1.S1_at	11/11	1	+	38241611..38245814	deoxynucleoside kinase family, putative, expressed
LOC_Os01g65350	Os.27339.1.S1_at	1/11	1	+	38241611..38245814	deoxynucleoside kinase family, putative, expressed
LOC_Os01g65360	OsAffx.23923.1.S1_at	11/11	1	+	38254254..38256080	hypothetical protein
LOC_Os01g65370	Os.37103.1.S1_at	11/11	1	+	38259107..38260222	Myb-like DNA-binding domain containing protein
LOC_Os01g65370	Os.57514.1.S1_x_at	7/11	1	+	38259107..38260222	Myb-like DNA-binding domain containing protein
LOC_Os01g65380	Os.7053.1.S1_s_at	11/11	1	+	38275729..38278807	Patellin-5, putative, expressed
LOC_Os01g65380	Os.7053.1.S1_at	11/11	1	+	38275729..38278807	Patellin-5, putative, expressed
LOC_Os01g65400	Os.24034.1.S1_a_at	11/11	1	+	38281940..38285850	5'-3' exonuclease, N-terminal resolvase-like domain containing protein, expressed
LOC_Os01g65400	Os.24034.3.S1_x_at	11/11	1	+	38281940..38285850	5'-3' exonuclease, N-terminal resolvase-like domain containing protein, expressed
LOC_Os01g65400	Os.24034.2.S1_x_at	11/11	1	+	38281940..38285850	5'-3' exonuclease, N-terminal resolvase-like domain containing protein, expressed

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Gene Ontology Classification

GO id	Type	Name
GO:0006355	biological_process	regulation of transcription, DNA-dependent
GO:0009611	biological_process	response to wounding
GO:0009800	biological_process	cinnamic acid biosynthesis
GO:0009892	biological_process	negative regulation of metabolism
GO:0010224	biological_process	response to UV-B
GO:0016481	biological_process	negative regulation of transcription
GO:0003677	molecular_function	DNA binding
GO:0003700	molecular_function	transcription factor activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.37103.1.S1_at--951--151	1	Chr01:38259759..38259783 (25 bp)	AGCAGCACAGGCTACACAACCCGGT	LOC_Os01g65370
Os.37103.1.S1_at--727--407	1	Chr01:38259798..38259822 (25 bp)	CGAGCAATGCGAGCTTCGCCAGGTC	LOC_Os01g65370
Os.37103.1.S1_at--664--937	1	Chr01:38259915..38259939 (25 bp)	TCGACCTGTCCATGAGCCTGCCGAG	LOC_Os01g65370
Os.37103.1.S1_at--1112--151	1	Chr01:38260002..38260026 (25 bp)	AGCAGCAGAAGACCATCTGCCTCTG	LOC_Os01g65370
Os.37103.1.S1_at--717--503	1	Chr01:38260006..38260030 (25 bp)	GCAGAAGACCATCTGCCTCTGCTAC	LOC_Os01g65370
Os.37103.1.S1_at--203--257	1	Chr01:38260046..38260070 (25 bp)	AACGGCGACGTCTGCAGCTGCAAGG	LOC_Os01g65370
Os.37103.1.S1_at--590--1057	1	Chr01:38260110..38260134 (25 bp)	TTCTCAGGCCACTGGAGGAGGGCCA	LOC_Os01g65370
Os.37103.1.S1_at--806--617	1	Chr01:38260124..38260148 (25 bp)	GAGGAGGGCCAGTACATATAGCACA	LOC_Os01g65370
Os.37103.1.S1_at--806--755	1	Chr01:38260129..38260153 (25 bp)	GGGCCAGTACATATAGCACAGCAGG	LOC_Os01g65370
Os.37103.1.S1_at--726--1017	1	Chr01:38260140..38260164 (25 bp)	TATAGCACAGCAGGCTTTAGGGAAA	LOC_Os01g65370
Os.37103.1.S1_at--582--769	1	Chr01:38260194..38260218 (25 bp)	GGTGGGCAATAGAGTTTTTTCTAAG	LOC_Os01g65370

Target Sequence

AGCAGCACAGGCTACACAACCCGGTGCACGCCGCGGCGCCGAGCAATGCGAGCTTCGCCAGGTCCGCGGCGTCCCCGCCG
TCGGAGGACGGCCACAGCAGCAGCGGCGGCAGCTCGGACGCGCCGCGGTGCCCCGACCTCAACCTCGACCTCGACCTCGA
CCTGTCCATGAGCCTGCCGAGCTCGCCGCCCAAGACGCCGGCCGCCGCGTCGTCCACGACCGCGTCGCGCCACCATCACC
ACCAGCAGCAGAAGACCATCTGCCTCTGCTACCACCTCGGCGTCCGCAACGGCGACGTCTGCAGCTGCAAGGCGGCCGCG
CCATCGCCGGCCGGCCCACGCGCGTTCCGGTTTCTCAGGCCACTGGAGGAGGGCCAGTACATATAGCACAGCAGGCTTTA
GGGAAAAAAAACCTGTAAAAAACACAAAAAAAAACGGTGGGCAATAGAGTTTTTTCTAAG

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis