Browse Element(s) Details


Os.37184.1.S1_at

Description gb:AK060239.1
DB_XREF= gi:32970257
TID=Os.37184.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.37184 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-003-D06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-003-D06, full insert sequence.
FL= gb:AK060239.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4323011/11expressed protein
LOC_Os01g431802/11Myb-like DNA-binding domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g43200NANA1+24998733..24999074hypothetical protein
LOC_Os01g43210Os.55650.1.A1_at6/111+25006438..25013558retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g43210OsAffx.21756.5.A1_x_at5/111+25006438..25013558retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g43210Os.52979.1.S1_at5/111+25006438..25013558retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g43210Os.7307.3.S1_x_at2/111+25006438..25013558retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g43210OsAffx.22143.1.S1_at2/111+25006438..25013558retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g43210OsAffx.4856.1.S1_x_at1/111+25006438..25013558retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g43210Os.22646.1.S1_x_at1/111+25006438..25013558retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g43220NANA1+25017379..25022910hypothetical protein
LOC_Os01g43230Os.37184.1.S1_at11/111+25022608..25024761expressed protein
LOC_Os01g43230OsAffx.23641.1.S1_at11/111+25022608..25024761expressed protein
LOC_Os01g43240OsAffx.23642.1.S1_at10/111+25026048..25028192hypothetical protein
LOC_Os01g43250Os.663.1.S1_at11/111+25030619..25035759seh1, putative, expressed
LOC_Os01g43260OsAffx.23643.1.S1_at11/111+25036563..25037242hypothetical protein
LOC_Os01g43270OsAffx.23644.1.S1_x_at11/111+25039018..25040460UDP-glucoronosyl and UDP-glucosyl transferase family protein
LOC_Os01g43270OsAffx.23644.1.S1_at11/111+25039018..25040460UDP-glucoronosyl and UDP-glucosyl transferase family protein
LOC_Os01g43274Os.51449.1.S1_at11/111+25041107..25041649expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009913biological_processepidermal cell differentiation
GO:0010063biological_processpositive regulation of trichoblast fate
GO:0030154biological_processcell differentiation
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37184.1.S1_at--745--8491Chr01:25023955..25023979 (25 bp)
TGGCTACTGAGTTATTTTGCTTATT
LOC_Os01g43230
Os.37184.1.S1_at--448--171Chr01:25023942..25023966 (25 bp)
ATTTTGCTTATTTTGGTGACCAGTT
LOC_Os01g43230
Os.37184.1.S1_at--884--7613Chr01:25023818..25023842 (25 bp)
GGGAACAGGTATCCTAATACACATA
LOC_Os01g43230
Os.37184.1.S1_at--731--251Chr01:25023789..25023813 (25 bp)
ATATCTGTAATGTGCATCAAGTGAA
LOC_Os01g43230
Os.37184.1.S1_at--344--9991Chr01:25023735..25023759 (25 bp)
TAGCTTGTACTATGATTGTTTCAGA
LOC_Os01g43230
Os.37184.1.S1_at--1000--8231Chr01:25023705..25023729 (25 bp)
GGCAAATTCATGAAACCCATATGTC
LOC_Os01g43230
Os.37184.1.S1_at--655--5551Chr01:25023694..25023718 (25 bp)
GAAACCCATATGTCTGTTTCAAAAA
LOC_Os01g43230
Os.37184.1.S1_at--546--333Chr01:25023668..25023692 (25 bp)
ATACATTATTTGCAGTTCCCTAACT
LOC_Os01g43230
Os.37184.1.S1_at--1052--10631Chr01:25023653..25023677 (25 bp)
TTCCCTAACTTTGCTCCTTGTATGG
LOC_Os01g43230
Os.37184.1.S1_at--103--4791Chr01:25023641..25023665 (25 bp)
GCTCCTTGTATGGAGTTATGCAGGT
LOC_Os01g43230
Os.37184.1.S1_at--344--8551Chr01:25023631..25023655 (25 bp)
TGGAGTTATGCAGGTGGGAACTTAT
LOC_Os01g43230
Target Sequence 
TGGCTACTGAGTTATTTTGCTTATTTTGGTGACCAGTTTTTTTAATAAATTTTGCAGAAGTTAATAACACTGCACAGAAT
TTTGTTCATTTCACGGAAGAAGAGGAAGATCTCGTTTTCAGAATGCACAGGCTTGTTGGGAACAGGTATCCTAATACACA
TATTACATATCTGTAATGTGCATCAAGTGAAAATGAAGACAAATTGTATTTTTACATTATTAGCTTGTACTATGATTGTT
TCAGAAGTTTGGCAAATTCATGAAACCCATATGTCTGTTTCAAAAAAATACATTATTTGCAGTTCCCTAACTTTGCTCCT
TGTATGGAGTTATGCAGGTGGGAACTTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37184.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis