Browse Element(s) Details


Os.37197.1.S1_at

Description gb:AK060184.1
DB_XREF= gi:32970202
TID=Os.37197.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.37197 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OSJNBa0075N02.12 (OSJNBa0075N02.12), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-001-C08, full insert sequence.
FL= gb:AK060184.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2711011/11RNA recognition motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g27080Os.46012.2.S1_x_at8/117+15692648..15698346retrotransposon protein, putative, unclassified
LOC_Os07g27080Os.46012.3.S1_x_at6/117+15692648..15698346retrotransposon protein, putative, unclassified
LOC_Os07g27080Os.27088.1.A1_x_at5/117+15692648..15698346retrotransposon protein, putative, unclassified
LOC_Os07g27080Os.54691.1.S1_x_at1/117+15692648..15698346retrotransposon protein, putative, unclassified
LOC_Os07g27090OsAffx.21755.1.S1_x_at1/117+15703068..15703964hypothetical protein
LOC_Os07g27100OsAffx.22351.1.S1_at11/117+15711361..15711660hypothetical protein
LOC_Os07g27110Os.37197.1.S1_at11/117+15716642..15721424RNA recognition motif family protein, expressed
LOC_Os07g27120Os.8069.1.S1_at11/117+15724593..15728423expressed protein
LOC_Os07g27120Os.35374.1.S1_x_at10/117+15724593..15728423expressed protein
LOC_Os07g27130Os.45967.1.A1_at1/117+15728576..15729518hypothetical protein
LOC_Os07g27140Os.46440.1.A1_s_at11/117+15731085..15743951AT hook motif family protein
LOC_Os07g27140Os.27347.1.S1_a_at11/117+15731085..15743951AT hook motif family protein
LOC_Os07g27140Os.27347.3.S1_at10/117+15731085..15743951AT hook motif family protein
LOC_Os07g27140Os.36388.1.S1_at1/117+15731085..15743951AT hook motif family protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37197.1.S1_at--279--4971Chr07:15720532..15720556 (25 bp)
GCATCCCACTGTGAGGAATCGTTCA
LOC_Os07g27110
Os.37197.1.S1_at--615--5171Chr07:15720547..15720647 (25 bp)
GAATCGTTCAGTCAGGGCCGTAAGT
LOC_Os07g27110
Os.37197.1.S1_at--699--6591Chr07:15720834..15720858 (25 bp)
GTTGGCCAAACCTTTTCATGAGCGA
LOC_Os07g27110
Os.37197.1.S1_at--624--4591Chr07:15720949..15720969 (21 bp)
GCGAAGTTCTGAGCCTGATGACCAC
LOC_Os07g27110
Os.37197.1.S1_at--305--10591Chr07:15720975..15720999 (25 bp)
TTCTGCCTATGAAGCTGCGGAGTAC
LOC_Os07g27110
Os.37197.1.S1_at--772--411Chr07:15721026..15721050 (25 bp)
ATCTTCCAGAGATGGCCCCAGTAAT
LOC_Os07g27110
Os.37197.1.S1_at--433--6931Chr07:15721171..15721195 (25 bp)
GTAGCGTCGAGTTACCATTGGTGCA
LOC_Os07g27110
Os.37197.1.S1_at--467--8671Chr07:15721246..15721270 (25 bp)
TGTGGGCGTTGCAATTTTTTCCGGC
LOC_Os07g27110
Os.37197.1.S1_at--158--4591Chr07:15721280..15721304 (25 bp)
GCGCACATTTTACCTTGGGATGCCA
LOC_Os07g27110
Os.37197.1.S1_at--305--8931Chr07:15721317..15721341 (25 bp)
TGACATTGTAGTTCGTTTACCCCGG
LOC_Os07g27110
Os.37197.1.S1_at--336--11Chr07:15721331..15721355 (25 bp)
GTTTACCCCGGATACATACCGATAG
LOC_Os07g27110
Target Sequence 
GCATCCCACTGTGAGGAATCGTTCAGTCAGGGCCGTAAGTTGATGGCATCAAGTTCCCCTGGGATGTGTAATTGTGGCGA
ATGCTATGTTGAACAAGATGCAGCCCCCGCAAGCTCCCAAGTGGTGCCTCTTCGTCACCAGTTGGCCAAACCTTTTCATG
AGCGAAGTTCTGAGCCTGATGACCACTCTGCTTCTGCCTATGAAGCTGCGGAGTACAAAGAACGCAAGAGCAGGTATCAT
CCATCTTCCAGAGATGGCCCCAGTAATACTCACCACAGGAATTACCGTAGACAAGGAAGATAGGTCCAAGTAAGCAAAGC
TAAGCTTTCGACAAGGTAGAGAAGCTGCTCATGGCAGTGCAGCTGCTGCTAGAGCTATACTTATTTAGTAGCGTCGAGTT
ACCATTGGTGCATTGGTGGTGCTCCCCCGATGCAGAATCCTCCCAAAAGGATTTCTGGCTTTTGTGGGCGTTGCAATTTT
TTCCGGCCCTGTGGTTGCGCACATTTTACCTTGGGATGCCATGTCATGTGATGTGACATTGTAGTTCGTTTACCCCGGAT
ACATACCGATAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37197.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis