Browse Element(s) Details


Os.37384.1.S1_s_at

Description gb:AK058852.1
DB_XREF= gi:32968870
TID=Os.37384.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.37384 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-005-A11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-005-A11, full insert sequence.
FL= gb:AK058852.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0651011/114Fe-4S binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g06470Os.44893.2.S1_x_at9/115+3301300..3312031expressed protein
LOC_Os05g06470Os.44893.2.S1_at6/115+3301300..3312031expressed protein
LOC_Os05g06480Os.49722.2.S1_at10/115+3313397..3317834Pyrophosphate-energized vacuolar membrane proton pump, putative, expressed
LOC_Os05g06480Os.49722.2.S1_x_at10/115+3313397..3317834Pyrophosphate-energized vacuolar membrane proton pump, putative, expressed
LOC_Os05g06490Os.9469.1.S1_at11/115+3320083..3322613RNA polymerase Rpb7, N-terminal domain containing protein, expressed
LOC_Os05g06500Os.10691.1.S1_at10/115+3323165..3325263universal stress protein family protein, expressed
LOC_Os05g06510Os.37384.1.S1_s_at11/115+3326831..33308634Fe-4S binding domain containing protein, expressed
LOC_Os05g06510Os.19268.1.S1_at11/115+3326831..33308634Fe-4S binding domain containing protein, expressed
LOC_Os05g06510Os.37384.1.S1_x_at10/115+3326831..33308634Fe-4S binding domain containing protein, expressed
LOC_Os05g06520NANA5+3333562..3333816Helix-loop-helix DNA-binding domain containing protein
LOC_Os05g06530Os.24178.1.A1_at10/115+3339204..3342505expressed protein
LOC_Os05g06530Os.24178.1.A1_x_at9/115+3339204..3342505expressed protein
LOC_Os05g06530Os.11641.1.S1_at7/115+3339204..3342505expressed protein
LOC_Os05g06540Os.24080.1.A1_at1/115+3347106..3351035hypothetical protein
LOC_Os05g06540Os.38041.1.S1_at1/115+3347106..3351035hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37384.1.S1_s_at--141--9851Chr05:3327295..3327319 (25 bp)
TACAAGAAGCTCTATCACTAGTCGG
LOC_Os05g06510
Os.37384.1.S1_s_at--514--1451Chr05:3327291..3327315 (25 bp)
AGAAGCTCTATCACTAGTCGGGCCT
LOC_Os05g06510
Os.37384.1.S1_s_at--1117--2691Chr05:3327289..3327313 (25 bp)
AAGCTCTATCACTAGTCGGGCCTGT
LOC_Os05g06510
Os.37384.1.S1_s_at--112--3771Chr05:3327286..3327310 (25 bp)
CTCTATCACTAGTCGGGCCTGTGAA
LOC_Os05g06510
Os.37384.1.S1_s_at--780--3311Chr05:3327280..3327304 (25 bp)
CACTAGTCGGGCCTGTGAAAGGTTA
LOC_Os05g06510
Os.37384.1.S1_s_at--71--10591Chr05:3327210..3327234 (25 bp)
TTCTCATCCAGATATAGGATAACTT
LOC_Os05g06510
Os.37384.1.S1_s_at--553--6771Chr05:3327174..3327198 (25 bp)
GTTAGTATGGAAGTTGCATTGTGAA
LOC_Os05g06510
Os.37384.1.S1_s_at--427--2271Chr05:3327060..3327084 (25 bp)
AAATCAGTAATCCAACAGTCAGCAG
LOC_Os05g06510
Os.37384.1.S1_s_at--464--7071Chr05:3327054..3327078 (25 bp)
GTAATCCAACAGTCAGCAGATCAAT
LOC_Os05g06510
Os.37384.1.S1_s_at--610--9211Chr05:3327050..3327074 (25 bp)
TCCAACAGTCAGCAGATCAATCACT
LOC_Os05g06510
Os.37384.1.S1_s_at--887--1131Chr05:3326954..3326978 (25 bp)
AGTCCATGTAAAACTCCATAAGAAA
LOC_Os05g06510
Target Sequence 
TACAAGAAGCTCTATCACTAGTCGGGCCTGTGAAAGGTTACCCAACCTTGCCAAGTCTCTGAAACTAGTAAATGGCATCT
CCAAGTTCTCATCCAGATATAGGATAACTTTGATCCAGTTAGTTAGTATGGAAGTTGCATTGTGAAGGTAAGCCAAGGTG
AGAAGGTATTCTGCCAACTGATTGCCCAATGAACAGTTTGGGAGTTGGGACCAACCATTTCTGGCTAAGTGGCAAAAATC
AGTAATCCAACAGTCAGCAGATCAATCACTAACTNACTCTTAAGCTTGGTAAGTNAGGAGATATNTCCATCTGAGATTGG
ATGTCACAACATGNCTTTCCATNAAAGTCCATGTAAAACTCCATAAGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37384.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis