Browse Element(s) Details


Os.37396.1.A1_at

Description gb:AK058797.1
DB_XREF= gi:32968815
TID=Os.37396.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.37396 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-002-H09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-002-H09, full insert sequence.
FL= gb:AK058797.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3964010/11U-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g39590Os.49318.1.S1_at11/119+22719823..22727019Cleavage and polyadenylation specificity factor, 100 kDa subunit, putative, expressed
LOC_Os09g39600OsAffx.18060.1.S1_at11/119+22729270..22730277hypothetical protein
LOC_Os09g39610Os.23699.1.A1_at2/119+22731580..22732191hypothetical protein
LOC_Os09g39620OsAffx.6534.1.S1_at11/119+22736078..22740681U-box domain containing protein, expressed
LOC_Os09g39630OsAffx.30212.1.S1_at11/119+22741663..22742696hypothetical protein
LOC_Os09g39640Os.37396.1.A1_at10/119+22746876..22751726U-box domain containing protein, expressed
LOC_Os09g39650Os.50881.1.S1_x_at11/119+22752886..22757022Protein kinase domain containing protein, expressed
LOC_Os09g39660Os.53586.1.S1_at11/119+22758450..22762056Zinc finger, C2H2 type family protein, expressed
LOC_Os09g39660Os.48903.1.A1_s_at11/119+22758450..22762056Zinc finger, C2H2 type family protein, expressed
LOC_Os09g39670Os.10960.1.S1_at11/119+22762384..22766477NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os09g39680Os.17754.1.S1_at11/119+22766856..22771134Major Facilitator Superfamily protein, expressed
LOC_Os09g39690Os.35018.1.S1_at11/119+22774478..22777104Neuralized protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37396.1.A1_at--554--6831Chr09:22751133..22751157 (25 bp)
GTTTCACCTACGAAGCAGAGGCTAT
LOC_Os09g39640
Os.37396.1.A1_at--1134--1091Chr09:22751174..22751198 (25 bp)
AGTGGTCACTATACATCACCCATGA
LOC_Os09g39640
Os.37396.1.A1_at--872--9971Chr09:22751211..22751235 (25 bp)
TACCACACCGTGATCTTTTGCCGAA
LOC_Os09g39640
Os.37396.1.A1_at--592--9171Chr09:22751239..22751263 (25 bp)
TGCCCTCCGTTCTGCAATTCAAGAA
LOC_Os09g39640
Os.37396.1.A1_at--85--5351Chr09:22751344..22751368 (25 bp)
GAAGATACATCTCAGACCAGGGTTA
LOC_Os09g39640
Os.37396.1.A1_at--568--3471Chr09:22751383..22751407 (25 bp)
CAGGAAACCAAACGTCTTGTGTCTT
LOC_Os09g39640
Os.37396.1.A1_at--769--9831Chr09:22751433..22751457 (25 bp)
TAAAGGTATACACACGGTTGTTCTT
LOC_Os09g39640
Os.37396.1.A1_at--933--1551Chr09:22751510..22751534 (25 bp)
AGCTATCTCTGCTCCATCAGTAGCA
LOC_Os09g39640
Os.37396.1.A1_at--111--2131Chr09:22751548..22751572 (25 bp)
ACAGGTAGTCACTTGTCACTTTGTC
LOC_Os09g39640
Os.37396.1.A1_at--1047--2871Chr09:22751694..22751713 (20 bp)
AAGGGTATCATGCTTACGTGTTGTA
LOC_Os09g39640
Os.37396.1.A1_at--518--1911NONE
ACGTGTTGTAACCATTCTGATTAAA
NONE
Target Sequence 
GTTTCACCTACGAAGCAGAGGCTATAAGAGAGTGGTTTGATAGTGGTCACTATACATCACCCATGACAAACCTCCGATCT
ACCACACCGTGATCTTTTGCCGAACCATGCCCTCCGTTCTGCAATTCAAGAATGGCTTCAGTCAAATGCAGATTAATATG
TTTGGATTCTCATCATGGAAAGTAACAATGAAAATTATGTCATATATCTTCTGAAGATACATCTCAGACCAGGGTTAATA
AGCAGAAACCACAGGAAACCAAACGTCTTGTGTCTTTTTTTGTTCTGAAGGAATGACTAATTAAAGGTATACACACGGTT
GTTCTTTTCTTTTCTTTTTTTTAGCAAAACCTGTATGTAAAAAATATAATAAATTCGGAGCTATCTCTGCTCCATCAGTA
GCATGGTAGACATTGTACAGGTAGTCACTTGTCACTTTGTCAGTGTAGTAGAGAGTTGTGATATCTGAGCAATAGCCAAA
AAAATGCTCAGCTAGAGTGTATGGAAGTGGAAATACATGTATGAATAGAACTATCAGATCAGAATTTCACCATTTATAAG
GGTATCATGCTTACGTGTTGTAACCATTCTGATTAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37396.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis