Browse Element(s) Details


Os.17754.1.S1_at

Description gb:AK065287.1
DB_XREF= gi:32975305
TID=Os.17754.1
CNT=17
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.17754 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013002M15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013002M15, full insert sequence.
FL= gb:AK061710.1 gb:AK065287.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3968011/11Major Facilitator Superfamily protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g39630OsAffx.30212.1.S1_at11/119+22741663..22742696hypothetical protein
LOC_Os09g39640Os.37396.1.A1_at10/119+22746876..22751726U-box domain containing protein, expressed
LOC_Os09g39650Os.50881.1.S1_x_at11/119+22752886..22757022Protein kinase domain containing protein, expressed
LOC_Os09g39660Os.53586.1.S1_at11/119+22758450..22762056Zinc finger, C2H2 type family protein, expressed
LOC_Os09g39660Os.48903.1.A1_s_at11/119+22758450..22762056Zinc finger, C2H2 type family protein, expressed
LOC_Os09g39670Os.10960.1.S1_at11/119+22762384..22766477NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os09g39680Os.17754.1.S1_at11/119+22766856..22771134Major Facilitator Superfamily protein, expressed
LOC_Os09g39690Os.35018.1.S1_at11/119+22774478..22777104Neuralized protein, putative, expressed
LOC_Os09g39700Os.54357.1.S1_at11/119+22778282..22783254expressed protein
LOC_Os09g39700OsAffx.30214.1.S1_x_at11/119+22778282..22783254expressed protein
LOC_Os09g39700Os.6094.1.S1_at1/119+22778282..22783254expressed protein
LOC_Os09g39710OsAffx.31174.4.S1_x_at6/119+22784556..22786281retrotransposon protein, putative, unclassified
LOC_Os09g39710OsAffx.31174.5.S1_x_at6/119+22784556..22786281retrotransposon protein, putative, unclassified
LOC_Os09g39720Os.12966.1.S1_at11/119+22790130..22791505oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os09g39730OsAffx.27508.10.S1_s_at9/119+22791564..22792383Core histone H2A/H2B/H3/H4 family protein, expressed
LOC_Os09g39740Os.47343.2.S1_x_at11/119+22792734..22797417ACT domain-containing protein, putative, expressed
LOC_Os09g39740Os.47343.2.S1_at11/119+22792734..22797417ACT domain-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0005351molecular_functionsugar porter activity
GO:0008514molecular_functionorganic anion transporter activity
GO:0015144molecular_functioncarbohydrate transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17754.1.S1_at--632--1611Chr09:22770554..22770578 (25 bp)
AGCTGTAGATGCTCTTATACGCACA
LOC_Os09g39680
Os.17754.1.S1_at--469--3831Chr09:22770691..22770715 (25 bp)
CTGCGTTTGACGGTTGGGACACTGA
LOC_Os09g39680
Os.17754.1.S1_at--1052--1111Chr09:22770778..22770802 (25 bp)
AGTGAATTACCTTACGCTGCCTGAA
LOC_Os09g39680
Os.17754.1.S1_at--1039--4771Chr09:22770793..22770817 (25 bp)
GCTGCCTGAAAGCATCTGCACCAAG
LOC_Os09g39680
Os.17754.1.S1_at--234--3451Chr09:22770824..22770848 (25 bp)
CAGTCTTTGCAGTAAGCTTGTCGCT
LOC_Os09g39680
Os.17754.1.S1_at--493--10071Chr09:22770907..22770931 (25 bp)
TAGTGAACCAGCTACCTTGCTTGCT
LOC_Os09g39680
Os.17754.1.S1_at--472--1371Chr09:22770945..22770969 (25 bp)
AGAGCTACTGCCAAACTCGTGTATT
LOC_Os09g39680
Os.17754.1.S1_at--547--9751Chr09:22771007..22771031 (25 bp)
TAATTTGTGATGCTGCTCCTGTTAT
LOC_Os09g39680
Os.17754.1.S1_at--384--4791Chr09:22771021..22771045 (25 bp)
GCTCCTGTTATTTTGCATATCCTGC
LOC_Os09g39680
Os.17754.1.S1_at--807--4671Chr09:22771044..22771068 (25 bp)
GCGGGATCGTATCGCATGACTATCT
LOC_Os09g39680
Os.17754.1.S1_at--23--651Chr09:22771069..22771093 (25 bp)
ATGCTTGTGCTGAATCATCCTATGC
LOC_Os09g39680
Target Sequence 
AGCTGTAGATGCTCTTATACGCACAAAAAGTATAGCTGATTTTGCTGATGTCTTATTGTGGTACGAGAAGAAAAGCTCTC
GTTTAGACAGAGAGATATAGCTGATTGAAAACCTTCATTTTAGCAAGAGAAATATAGCTGCGTTTGACGGTTGGGACACT
GAAAACAATGAAGAGCAAACTGAAGAGTTGCAATGGATTAGTCTGTGAACTGAAACTTGGAGCCAGTGAATTACCTTACG
CTGCCTGAAAGCATCTGCACCAAGAAGTGTCAGTCTTTGCAGTAAGCTTGTCGCTGAACAAGCTCCTGCCCAACTTGCTN
AACATCTTCTTTTGTTTTGAAATATTGATCCACTAGTGAACCAGCTACCTTGCTTGCTCGAGGAAGGAGCTAGAGCTACT
GCCAAACTCGTGTATTATGAGAGCATTTTGGGAGATTAAGCTTTTTTTTTTGTTAATTTGTGATGCTGCTCCTGTTATTT
TGCATATCCTGCGGGATCGTATCGCATGACTATCTATGCTTGTGCTGAATCATCCTATGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17754.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis