Browse Element(s) Details


OsAffx.30214.1.S1_x_at

Description tigr:9637.m03403
TID=OsAffx.30214.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3970011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g39650Os.50881.1.S1_x_at11/119+22752886..22757022Protein kinase domain containing protein, expressed
LOC_Os09g39660Os.53586.1.S1_at11/119+22758450..22762056Zinc finger, C2H2 type family protein, expressed
LOC_Os09g39660Os.48903.1.A1_s_at11/119+22758450..22762056Zinc finger, C2H2 type family protein, expressed
LOC_Os09g39670Os.10960.1.S1_at11/119+22762384..22766477NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os09g39680Os.17754.1.S1_at11/119+22766856..22771134Major Facilitator Superfamily protein, expressed
LOC_Os09g39690Os.35018.1.S1_at11/119+22774478..22777104Neuralized protein, putative, expressed
LOC_Os09g39700Os.54357.1.S1_at11/119+22778282..22783254expressed protein
LOC_Os09g39700OsAffx.30214.1.S1_x_at11/119+22778282..22783254expressed protein
LOC_Os09g39700Os.6094.1.S1_at1/119+22778282..22783254expressed protein
LOC_Os09g39710OsAffx.31174.4.S1_x_at6/119+22784556..22786281retrotransposon protein, putative, unclassified
LOC_Os09g39710OsAffx.31174.5.S1_x_at6/119+22784556..22786281retrotransposon protein, putative, unclassified
LOC_Os09g39720Os.12966.1.S1_at11/119+22790130..22791505oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os09g39730OsAffx.27508.10.S1_s_at9/119+22791564..22792383Core histone H2A/H2B/H3/H4 family protein, expressed
LOC_Os09g39740Os.47343.2.S1_x_at11/119+22792734..22797417ACT domain-containing protein, putative, expressed
LOC_Os09g39740Os.47343.2.S1_at11/119+22792734..22797417ACT domain-containing protein, putative, expressed
LOC_Os09g39750OsAffx.18061.1.S1_at11/119+22799910..22801700expressed protein
LOC_Os09g39760Os.54835.1.S1_s_at11/119+22804201..22806568Pectinesterase family protein, expressed
LOC_Os09g39760OsAffx.30215.1.S1_at11/119+22804201..22806568Pectinesterase family protein, expressed
LOC_Os09g39760OsAffx.23254.1.S1_x_at1/119+22804201..22806568Pectinesterase family protein, expressed
LOC_Os09g39770Os.10654.1.S1_s_at11/119+22805525..22806568C2 domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016779molecular_functionnucleotidyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30214.1.S1_x_at--472--1391Chr09:22781988..22782012 (25 bp)
AGACCCTTCTGTTTGGATGCCTTAA
LOC_Os09g39700
OsAffx.30214.1.S1_x_at--83--7051Chr09:22782030..22782054 (25 bp)
GTAAACCTCGTTTGAAGCGTGGCAA
LOC_Os09g39700
OsAffx.30214.1.S1_x_at--885--2711Chr09:22782110..22782134 (25 bp)
AAGCATGCTGTGCACCTAGTAGGAT
LOC_Os09g39700
OsAffx.30214.1.S1_x_at--731--6931Chr09:22782128..22782152 (25 bp)
GTAGGATCAGACCAGCATGCTAATT
LOC_Os09g39700
OsAffx.30214.1.S1_x_at--915--111Chr09:22782150..22782174 (25 bp)
ATTCTACAACTGCTGAAGCTCCTCA
LOC_Os09g39700
OsAffx.30214.1.S1_x_at--789--2691Chr09:22782165..22782189 (25 bp)
AAGCTCCTCAGGTTGTACATCGACA
LOC_Os09g39700
OsAffx.30214.1.S1_x_at--47--931Chr09:22782204..22782228 (25 bp)
AGGCTAGTACTCAGTGTGCGCACAA
LOC_Os09g39700
OsAffx.30214.1.S1_x_at--406--1691Chr09:22782228..22782252 (25 bp)
AGCCAACGCCACCTTTTGTTATTAT
LOC_Os09g39700
OsAffx.30214.1.S1_x_at--1052--151Chr09:22782248..22782272 (25 bp)
ATTATCCCTTCTGGTTTTGGCTACA
LOC_Os09g39700
OsAffx.30214.1.S1_x_at--568--8291Chr09:22782266..22782290 (25 bp)
GGCTACAGTTTATCGCTTCAGTTGC
LOC_Os09g39700
OsAffx.30214.1.S1_x_at--110--8551Chr09:22782361..22782385 (25 bp)
TGGAGCTCAGCTACCACAGCAAGGT
LOC_Os09g39700
Target Sequence 
AGACCCTTCTGTTTGGATGCCTTAAACCAGATGAGCTAGTCAGTAAACCTCGTTTGAAGCGTGGCAAGAGAAAACGCAAG
CCACAAACGAGCCCAGATAGCAGATATGGGCTCGGAAAGGGAAAGCATGCTGTGCACCTAGTAGGATCAGACCAGCATGC
TAATTCTACAACTGCTGAAGCTCCTCAGGTTGTACATCGACATCCCACCCAGGCTAAGGCTAGTACTCAGTGTGCGCACA
AGCCAACGCCACCTTTTGTTATTATCCCTTCTGGTTTTGGCTACAGTTTATCGCTTCAGTTGCCAGTGGCTCCTCAGCTT
AGTCGAGGATTGCTGGGCCGACCCCCACCAGTTAATTTAGTTCACTTGAATAATGGAGCTCAGCTACCACAGCAAGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30214.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis