Browse Element(s) Details

Os.47343.2.S1_at

Description

gb:AK068397.1
DB_XREF= gi:32978415
TID=Os.47343.2
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.47343 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023088I05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013151F12, full insert sequence.
FL= gb:AK068397.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os09g39740	11/11	ACT domain-containing protein, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os09g39680	Os.17754.1.S1_at	11/11	9	+	22766856..22771134	Major Facilitator Superfamily protein, expressed
LOC_Os09g39690	Os.35018.1.S1_at	11/11	9	+	22774478..22777104	Neuralized protein, putative, expressed
LOC_Os09g39700	Os.54357.1.S1_at	11/11	9	+	22778282..22783254	expressed protein
LOC_Os09g39700	OsAffx.30214.1.S1_x_at	11/11	9	+	22778282..22783254	expressed protein
LOC_Os09g39700	Os.6094.1.S1_at	1/11	9	+	22778282..22783254	expressed protein
LOC_Os09g39710	OsAffx.31174.4.S1_x_at	6/11	9	+	22784556..22786281	retrotransposon protein, putative, unclassified
LOC_Os09g39710	OsAffx.31174.5.S1_x_at	6/11	9	+	22784556..22786281	retrotransposon protein, putative, unclassified
LOC_Os09g39720	Os.12966.1.S1_at	11/11	9	+	22790130..22791505	oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os09g39730	OsAffx.27508.10.S1_s_at	9/11	9	+	22791564..22792383	Core histone H2A/H2B/H3/H4 family protein, expressed
LOC_Os09g39740	Os.47343.2.S1_x_at	11/11	9	+	22792734..22797417	ACT domain-containing protein, putative, expressed
LOC_Os09g39740	Os.47343.2.S1_at	11/11	9	+	22792734..22797417	ACT domain-containing protein, putative, expressed
LOC_Os09g39750	OsAffx.18061.1.S1_at	11/11	9	+	22799910..22801700	expressed protein
LOC_Os09g39760	Os.54835.1.S1_s_at	11/11	9	+	22804201..22806568	Pectinesterase family protein, expressed
LOC_Os09g39760	OsAffx.30215.1.S1_at	11/11	9	+	22804201..22806568	Pectinesterase family protein, expressed
LOC_Os09g39760	OsAffx.23254.1.S1_x_at	1/11	9	+	22804201..22806568	Pectinesterase family protein, expressed
LOC_Os09g39770	Os.10654.1.S1_s_at	11/11	9	+	22805525..22806568	C2 domain containing protein, expressed
LOC_Os09g39780	Os.5492.1.S1_at	11/11	9	+	22809423..22810520	Peptidyl-prolyl cis-trans isomerase, putative, expressed
LOC_Os09g39790	Os.53317.1.S1_x_at	11/11	9	+	22810710..22813586	lipase class 3 family protein, putative, expressed
LOC_Os09g39790	Os.53317.2.S1_at	11/11	9	+	22810710..22813586	lipase class 3 family protein, putative, expressed
LOC_Os09g39800	OsAffx.30216.1.S1_at	11/11	9	+	22817548..22817970	hypothetical protein
LOC_Os09g39810	OsAffx.6536.1.S1_at	11/11	9	+	22821100..22821495	Ethylene-responsive transcription factor 14, putative, expressed

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Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.47343.2.S1_at--252--373	1	Chr09:22792777..22792814 (25 bp)	CTAAAGTGGTAGTAAGCAAGCCAGT	LOC_Os09g39740
Os.47343.2.S1_at--176--751	1	Chr09:22792772..22792792 (21 bp)	GTGGTAGTAAGCAAGCCAGTGAACC	LOC_Os09g39740
Os.47343.2.S1_at--14--1007	1	Chr09:22792768..22792792 (25 bp)	TAGTAAGCAAGCCAGTGAACCAATT	LOC_Os09g39740
Os.47343.2.S1_at--940--705	1	Chr09:22792766..22792790 (25 bp)	GTAAGCAAGCCAGTGAACCAATTGA	LOC_Os09g39740
Os.47343.2.S1_at--237--273	1	Chr09:22792764..22792788 (25 bp)	AAGCAAGCCAGTGAACCAATTGAAT	LOC_Os09g39740
Os.47343.2.S1_at--703--265	1	Chr09:22792760..22792784 (25 bp)	AAGCCAGTGAACCAATTGAATGCAT	LOC_Os09g39740
Os.47343.2.S1_at--106--443	1	Chr09:22792758..22792782 (25 bp)	GCCAGTGAACCAATTGAATGCATTC	LOC_Os09g39740
Os.47343.2.S1_at--653--527	1	Chr09:22792743..22792767 (25 bp)	GAATGCATTCATTCAATAGCCTTGT	LOC_Os09g39740
Os.47343.2.S1_at--308--907	1	Chr09:22792740..22792764 (25 bp)	TGCATTCATTCAATAGCCTTGTTGG	LOC_Os09g39740
Os.47343.2.S1_at--528--359	1	Chr09:22792738..22792762 (25 bp)	CATTCATTCAATAGCCTTGTTGGCA	LOC_Os09g39740
Os.47343.2.S1_at--1018--959	1	Chr09:22792735..22792759 (25 bp)	TCATTCAATAGCCTTGTTGGCAAAT	LOC_Os09g39740

Target Sequence

CTAAAGTGGTAGTAAGCAAGCCAGTGAACCAATTGAATGCATTCATTCAATAGCCTTGTTGGCAAAT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis