Browse Element(s) Details


Os.35018.1.S1_at

Description gb:AK069259.1
DB_XREF= gi:32979283
TID=Os.35018.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.35018 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023011H14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023011H14, full insert sequence.
FL= gb:AK069259.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3969011/11Neuralized protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g39640Os.37396.1.A1_at10/119+22746876..22751726U-box domain containing protein, expressed
LOC_Os09g39650Os.50881.1.S1_x_at11/119+22752886..22757022Protein kinase domain containing protein, expressed
LOC_Os09g39660Os.53586.1.S1_at11/119+22758450..22762056Zinc finger, C2H2 type family protein, expressed
LOC_Os09g39660Os.48903.1.A1_s_at11/119+22758450..22762056Zinc finger, C2H2 type family protein, expressed
LOC_Os09g39670Os.10960.1.S1_at11/119+22762384..22766477NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os09g39680Os.17754.1.S1_at11/119+22766856..22771134Major Facilitator Superfamily protein, expressed
LOC_Os09g39690Os.35018.1.S1_at11/119+22774478..22777104Neuralized protein, putative, expressed
LOC_Os09g39700Os.54357.1.S1_at11/119+22778282..22783254expressed protein
LOC_Os09g39700OsAffx.30214.1.S1_x_at11/119+22778282..22783254expressed protein
LOC_Os09g39700Os.6094.1.S1_at1/119+22778282..22783254expressed protein
LOC_Os09g39710OsAffx.31174.4.S1_x_at6/119+22784556..22786281retrotransposon protein, putative, unclassified
LOC_Os09g39710OsAffx.31174.5.S1_x_at6/119+22784556..22786281retrotransposon protein, putative, unclassified
LOC_Os09g39720Os.12966.1.S1_at11/119+22790130..22791505oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os09g39730OsAffx.27508.10.S1_s_at9/119+22791564..22792383Core histone H2A/H2B/H3/H4 family protein, expressed
LOC_Os09g39740Os.47343.2.S1_x_at11/119+22792734..22797417ACT domain-containing protein, putative, expressed
LOC_Os09g39740Os.47343.2.S1_at11/119+22792734..22797417ACT domain-containing protein, putative, expressed
LOC_Os09g39750OsAffx.18061.1.S1_at11/119+22799910..22801700expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.35018.1.S1_at--793--7631Chr09:22776458..22776482 (25 bp)
GGGACGTGCTGTATATGCTGTGATA
LOC_Os09g39690
Os.35018.1.S1_at--164--7411Chr09:22776477..22776501 (25 bp)
GTGATACTCCGATTGACTCTCTTTT
LOC_Os09g39690
Os.35018.1.S1_at--411--2011Chr09:22776492..22776653 (25 bp)
ACTCTCTTTTGTACAGATGTGGGCA
LOC_Os09g39690
Os.35018.1.S1_at--764--7331Chr09:22776657..22776681 (25 bp)
GTGCACATGTTCAAAATGCGCGAAT
LOC_Os09g39690
Os.35018.1.S1_at--368--3891Chr09:22776712..22776736 (25 bp)
CTGTGCCGTGCACCCATAATTGAGG
LOC_Os09g39690
Os.35018.1.S1_at--213--3171Chr09:22776729..22776753 (25 bp)
AATTGAGGTGATCCGAGCATACTTC
LOC_Os09g39690
Os.35018.1.S1_at--1017--6371Chr09:22776738..22776762 (25 bp)
GATCCGAGCATACTTCATCATGTAG
LOC_Os09g39690
Os.35018.1.S1_at--351--10571Chr09:22776808..22776832 (25 bp)
TTCTTTTTCCTACTTAGAGCTTGTA
LOC_Os09g39690
Os.35018.1.S1_at--711--3132Chr09:22776860..22776884 (25 bp)
AATTTTAGCTATGCCCTATGCCTGT
LOC_Os09g39690
Os.35018.1.S1_at--446--4551Chr09:22776872..22776896 (25 bp)
GCCCTATGCCTGTGTTGTCTTGTGT
LOC_Os09g39690
Os.35018.1.S1_at--644--9591Chr09:22776889..22776913 (25 bp)
TCTTGTGTGTCTCTTGTCTCTGATG
LOC_Os09g39690
Target Sequence 
GGGACGTGCTGTATATGCTGTGATACTCCGATTGACTCTCTTTTGTACAGATGTGGGCACATGTGCACATGTTCAAAATG
CGCGAATGAGTTGGTTCGAAGCGGAGGGAAATGCCCGCTGTGCCGTGCACCCATAATTGAGGTGATCCGAGCATACTTCA
TCATGTAGATACAGAGAGAAAGGAAGATAAAGAAGAAGAAATGTTTTTTTCTTTTCTTTTTCCTACTTAGAGCTTGTAGG
TGTTAGTGGATGTATGATTATATTCAATTTTAGCTATGCCCTATGCCTGTGTTGTCTTGTGTGTCTCTTGTCTCTGATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.35018.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis