Browse Element(s) Details


OsAffx.18061.1.S1_at

Description tigr:9637.m03408
TID=OsAffx.18061.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3975011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g39690Os.35018.1.S1_at11/119+22774478..22777104Neuralized protein, putative, expressed
LOC_Os09g39700Os.54357.1.S1_at11/119+22778282..22783254expressed protein
LOC_Os09g39700OsAffx.30214.1.S1_x_at11/119+22778282..22783254expressed protein
LOC_Os09g39700Os.6094.1.S1_at1/119+22778282..22783254expressed protein
LOC_Os09g39710OsAffx.31174.4.S1_x_at6/119+22784556..22786281retrotransposon protein, putative, unclassified
LOC_Os09g39710OsAffx.31174.5.S1_x_at6/119+22784556..22786281retrotransposon protein, putative, unclassified
LOC_Os09g39720Os.12966.1.S1_at11/119+22790130..22791505oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os09g39730OsAffx.27508.10.S1_s_at9/119+22791564..22792383Core histone H2A/H2B/H3/H4 family protein, expressed
LOC_Os09g39740Os.47343.2.S1_x_at11/119+22792734..22797417ACT domain-containing protein, putative, expressed
LOC_Os09g39740Os.47343.2.S1_at11/119+22792734..22797417ACT domain-containing protein, putative, expressed
LOC_Os09g39750OsAffx.18061.1.S1_at11/119+22799910..22801700expressed protein
LOC_Os09g39760Os.54835.1.S1_s_at11/119+22804201..22806568Pectinesterase family protein, expressed
LOC_Os09g39760OsAffx.30215.1.S1_at11/119+22804201..22806568Pectinesterase family protein, expressed
LOC_Os09g39760OsAffx.23254.1.S1_x_at1/119+22804201..22806568Pectinesterase family protein, expressed
LOC_Os09g39770Os.10654.1.S1_s_at11/119+22805525..22806568C2 domain containing protein, expressed
LOC_Os09g39780Os.5492.1.S1_at11/119+22809423..22810520Peptidyl-prolyl cis-trans isomerase, putative, expressed
LOC_Os09g39790Os.53317.1.S1_x_at11/119+22810710..22813586lipase class 3 family protein, putative, expressed
LOC_Os09g39790Os.53317.2.S1_at11/119+22810710..22813586lipase class 3 family protein, putative, expressed
LOC_Os09g39800OsAffx.30216.1.S1_at11/119+22817548..22817970hypothetical protein
LOC_Os09g39810OsAffx.6536.1.S1_at11/119+22821100..22821495Ethylene-responsive transcription factor 14, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18061.1.S1_at--335--2751Chr09:22800702..22800726 (25 bp)
AAGAAGCTGTTCCATGTCGATTTAC
LOC_Os09g39750
OsAffx.18061.1.S1_at--199--6531Chr09:22800684..22800708 (25 bp)
GATTTACAGGGTGAAGCCGGCCAAC
LOC_Os09g39750
OsAffx.18061.1.S1_at--1075--3471Chr09:22800572..22800596 (25 bp)
CAGGTTGAGTCTTTGCCATTGTCGC
LOC_Os09g39750
OsAffx.18061.1.S1_at--461--3771Chr09:22800535..22800559 (25 bp)
CTCTGTCTCATCTCGTCAATAAGCA
LOC_Os09g39750
OsAffx.18061.1.S1_at--739--5011Chr09:22800495..22800519 (25 bp)
GCAGGATCGTTTTTCCGGTGGTACA
LOC_Os09g39750
OsAffx.18061.1.S1_at--771--6451Chr09:22800305..22800329 (25 bp)
GATAATGCACCACCACTAGTACAGT
LOC_Os09g39750
OsAffx.18061.1.S1_at--938--5071Chr09:22800260..22800284 (25 bp)
GCACCCAGGCCGGAGGATTTTGTTA
LOC_Os09g39750
OsAffx.18061.1.S1_at--47--6551Chr09:22800245..22800269 (25 bp)
GATTTTGTTAGCTCGGCAGCAGCAG
LOC_Os09g39750
OsAffx.18061.1.S1_at--111--10071Chr09:22800178..22800202 (25 bp)
TAGTCGTAGCATTCCGTCTTGACAA
LOC_Os09g39750
OsAffx.18061.1.S1_at--1059--4631Chr09:22799989..22800013 (25 bp)
GCGTTACCATATCCAGTAGCACTGT
LOC_Os09g39750
OsAffx.18061.1.S1_at--836--4931Chr09:22799947..22799971 (25 bp)
GCTTGGCTTGTTCCTCTAATTATCA
LOC_Os09g39750
Target Sequence 
AAGAAGCTGTTCCATGTCGATTTACAGGGTGAAGCCGGCCAACCTGCTCATGCGTCTCATCGCTTGCGGTTGCGGCTCCT
CCATTCCCATTCCAGCGGCTGCGGCTGCGGCTGCTAAGCAGCAGCTACAGCAGGTTGAGTCTTTGCCATTGTCGCCGGTG
CTGTCTCCTCTGTCTCATCTCGTCAATAAGCAGCAGCTGCCTCATGAGCAGGATCGTTTTTCCGGTGGTACAATCAGTAC
TAGTAATGCTAATGCAGCAGGGAAGCTCAAAGTTGCTGATGATAATGCACCACCACTAGTACAGTCCCAAATAGAATGCT
CAAATGCACCCAGGCCGGAGGATTTTGTTAGCTCGGCAGCAGCAGCTGCTGGTAATACTACAAACGAACTGGCACATTCA
AGGCCGGTAGTCGTAGCATTCCGTCTTGACAAACACGACGACAAGGTCATCAAGATCGAGGAGAGGCTTGCTTCTGGAGC
CCGCGTTACCATATCCAGTAGCACTGTGCACCCAGCTGCAGGTGGCTTGGCTTGTTCCTCTAATTATCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18061.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis