Browse Element(s) Details


Os.12966.1.S1_at

Description gb:AK064211.1
DB_XREF= gi:32974229
TID=Os.12966.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12966 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-104-E12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-104-E12, full insert sequence.
FL= gb:AK064211.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3972011/11oxidoreductase, 2OG-Fe oxygenase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g39670Os.10960.1.S1_at11/119+22762384..22766477NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os09g39680Os.17754.1.S1_at11/119+22766856..22771134Major Facilitator Superfamily protein, expressed
LOC_Os09g39690Os.35018.1.S1_at11/119+22774478..22777104Neuralized protein, putative, expressed
LOC_Os09g39700Os.54357.1.S1_at11/119+22778282..22783254expressed protein
LOC_Os09g39700OsAffx.30214.1.S1_x_at11/119+22778282..22783254expressed protein
LOC_Os09g39700Os.6094.1.S1_at1/119+22778282..22783254expressed protein
LOC_Os09g39710OsAffx.31174.4.S1_x_at6/119+22784556..22786281retrotransposon protein, putative, unclassified
LOC_Os09g39710OsAffx.31174.5.S1_x_at6/119+22784556..22786281retrotransposon protein, putative, unclassified
LOC_Os09g39720Os.12966.1.S1_at11/119+22790130..22791505oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os09g39730OsAffx.27508.10.S1_s_at9/119+22791564..22792383Core histone H2A/H2B/H3/H4 family protein, expressed
LOC_Os09g39740Os.47343.2.S1_x_at11/119+22792734..22797417ACT domain-containing protein, putative, expressed
LOC_Os09g39740Os.47343.2.S1_at11/119+22792734..22797417ACT domain-containing protein, putative, expressed
LOC_Os09g39750OsAffx.18061.1.S1_at11/119+22799910..22801700expressed protein
LOC_Os09g39760Os.54835.1.S1_s_at11/119+22804201..22806568Pectinesterase family protein, expressed
LOC_Os09g39760OsAffx.30215.1.S1_at11/119+22804201..22806568Pectinesterase family protein, expressed
LOC_Os09g39760OsAffx.23254.1.S1_x_at1/119+22804201..22806568Pectinesterase family protein, expressed
LOC_Os09g39770Os.10654.1.S1_s_at11/119+22805525..22806568C2 domain containing protein, expressed
LOC_Os09g39780Os.5492.1.S1_at11/119+22809423..22810520Peptidyl-prolyl cis-trans isomerase, putative, expressed
LOC_Os09g39790Os.53317.1.S1_x_at11/119+22810710..22813586lipase class 3 family protein, putative, expressed
LOC_Os09g39790Os.53317.2.S1_at11/119+22810710..22813586lipase class 3 family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009058biological_processbiosynthesis
GO:0019748biological_processsecondary metabolism
GO:0016706molecular_functionoxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12966.1.S1_at--387--8651Chr09:22791011..22791035 (25 bp)
TGGGCGACCACCTGGAGATACTGAG
LOC_Os09g39720
Os.12966.1.S1_at--273--1271Chr09:22791026..22791050 (25 bp)
AGATACTGAGCAACGGGCTGTACCG
LOC_Os09g39720
Os.12966.1.S1_at--346--8751Chr09:22791044..22791068 (25 bp)
TGTACCGGAGCGTGCTGCACCGTGT
LOC_Os09g39720
Os.12966.1.S1_at--315--851Chr09:22791190..22791214 (25 bp)
ATGGACACCGACATGGCCGCGTTCC
LOC_Os09g39720
Os.12966.1.S1_at--936--8911Chr09:22791296..22791320 (25 bp)
TGACCCAACCCAGCAACTAAATTAA
LOC_Os09g39720
Os.12966.1.S1_at--577--4391Chr09:22791359..22791383 (25 bp)
GCCAAATTAAGAGTACGTCGTCCCT
LOC_Os09g39720
Os.12966.1.S1_at--348--10171Chr09:22791397..22791421 (25 bp)
TATACAAACATATCCACCCTGGTTG
LOC_Os09g39720
Os.12966.1.S1_at--75--1811Chr09:22791412..22791436 (25 bp)
ACCCTGGTTGCAACTGTAGTGTTAA
LOC_Os09g39720
Os.12966.1.S1_at--26--6771Chr09:22791432..22791456 (25 bp)
GTTAAGCTAGCACGGAATCCATCAC
LOC_Os09g39720
Os.12966.1.S1_at--552--8211Chr09:22791445..22791469 (25 bp)
GGAATCCATCACTGTACAAGCATGT
LOC_Os09g39720
Os.12966.1.S1_at--509--3511Chr09:22791465..22791489 (25 bp)
CATGTGTGTACGTGCAGTGATTTAA
LOC_Os09g39720
Target Sequence 
TGGGCGACCACCTGGAGATACTGAGCAACGGGCTGTACCGGAGCGTGCTGCACCGTGTGCGCGTGAACGGTCGGCGGGCG
CGCGTGTCGGTGGCGTCGCTGCACAGCCTGGCGGCGGAGCGTGTGATCGGGCCGGCGGCGGAGCTGGTGGACGAGCAGCG
GGGCAGGCCGCGGCGGTACATGGACACCGACATGGCCGCGTTCCTTGCCTACCTCGCCTCCGCAGAGGGCAACCGCAAGT
CCTTCCTCCACTCCCGCAGGATCAACACCATTTCTTNTTCCGGACTGACCCAACCCAGCAACTAAATTAATTAGCTGGAC
GTACGGNACTCTCTATNTAATTACTAGTNGCCAAATTAAGAGTACGTCGTCCCTTNTAGCTAGTTCCTATACAAACATAT
CCACCCTGGTTGCAACTGTAGTGTTAAGCTAGCACGGAATCCATCACTGTACAAGCATGTGTGTACGTGCAGTGATTTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12966.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis