Browse Element(s) Details


Os.54357.1.S1_at

Description gb:AK103632.1
DB_XREF= gi:32988841
TID=Os.54357.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54357 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-125-E01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033133P15, full insert sequence.
FL= gb:AK103632.1 gb:AK105456.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3970011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g39650Os.50881.1.S1_x_at11/119+22752886..22757022Protein kinase domain containing protein, expressed
LOC_Os09g39660Os.53586.1.S1_at11/119+22758450..22762056Zinc finger, C2H2 type family protein, expressed
LOC_Os09g39660Os.48903.1.A1_s_at11/119+22758450..22762056Zinc finger, C2H2 type family protein, expressed
LOC_Os09g39670Os.10960.1.S1_at11/119+22762384..22766477NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os09g39680Os.17754.1.S1_at11/119+22766856..22771134Major Facilitator Superfamily protein, expressed
LOC_Os09g39690Os.35018.1.S1_at11/119+22774478..22777104Neuralized protein, putative, expressed
LOC_Os09g39700Os.54357.1.S1_at11/119+22778282..22783254expressed protein
LOC_Os09g39700OsAffx.30214.1.S1_x_at11/119+22778282..22783254expressed protein
LOC_Os09g39700Os.6094.1.S1_at1/119+22778282..22783254expressed protein
LOC_Os09g39710OsAffx.31174.4.S1_x_at6/119+22784556..22786281retrotransposon protein, putative, unclassified
LOC_Os09g39710OsAffx.31174.5.S1_x_at6/119+22784556..22786281retrotransposon protein, putative, unclassified
LOC_Os09g39720Os.12966.1.S1_at11/119+22790130..22791505oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os09g39730OsAffx.27508.10.S1_s_at9/119+22791564..22792383Core histone H2A/H2B/H3/H4 family protein, expressed
LOC_Os09g39740Os.47343.2.S1_x_at11/119+22792734..22797417ACT domain-containing protein, putative, expressed
LOC_Os09g39740Os.47343.2.S1_at11/119+22792734..22797417ACT domain-containing protein, putative, expressed
LOC_Os09g39750OsAffx.18061.1.S1_at11/119+22799910..22801700expressed protein
LOC_Os09g39760Os.54835.1.S1_s_at11/119+22804201..22806568Pectinesterase family protein, expressed
LOC_Os09g39760OsAffx.30215.1.S1_at11/119+22804201..22806568Pectinesterase family protein, expressed
LOC_Os09g39760OsAffx.23254.1.S1_x_at1/119+22804201..22806568Pectinesterase family protein, expressed
LOC_Os09g39770Os.10654.1.S1_s_at11/119+22805525..22806568C2 domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0016779molecular_functionnucleotidyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54357.1.S1_at--92--231Chr09:22782733..22782757 (25 bp)
ATATATGGGCTCCTGGGTTGTGTCA
LOC_Os09g39700
Os.54357.1.S1_at--911--7151Chr09:22782825..22782849 (25 bp)
GTCTACCTGTAGTTTGTTCTGTATT
LOC_Os09g39700
Os.54357.1.S1_at--771--6531Chr09:22782903..22782927 (25 bp)
GATTTTGCTGTGTTTTCGAGTACGG
LOC_Os09g39700
Os.54357.1.S1_at--273--8051Chr09:22782928..22782952 (25 bp)
GGAGATGATTTTGATGCCCCAACAA
LOC_Os09g39700
Os.54357.1.S1_at--1119--8131Chr09:22782983..22783007 (25 bp)
GGACAATGCTTGGATCGATGACGAA
LOC_Os09g39700
Os.54357.1.S1_at--120--2271Chr09:22783048..22783072 (25 bp)
AAATCTTTGGGACACTTGACATAGC
LOC_Os09g39700
Os.54357.1.S1_at--243--9671Chr09:22783109..22783133 (25 bp)
TCACTTTGGTTGAAATGGGTCCGAC
LOC_Os09g39700
Os.54357.1.S1_at--547--7791Chr09:22783126..22783150 (25 bp)
GGTCCGACCGACAGCATAAACACAA
LOC_Os09g39700
Os.54357.1.S1_at--685--4831Chr09:22783154..22783178 (25 bp)
GCTCAACTTGTTGCCCATCAATAAT
LOC_Os09g39700
Os.54357.1.S1_at--163--231Chr09:22783180..22783204 (25 bp)
ATATTAAAGCCTGTCTCTCTGTCTG
LOC_Os09g39700
Os.54357.1.S1_at--631--3771Chr09:22783194..22783218 (25 bp)
CTCTCTGTCTGCCTGATAACATAGC
LOC_Os09g39700
Target Sequence 
ATATATGGGCTCCTGGGTTGTGTCAGCTCAGCCTTCCTTCAAACCATATGACACCCAACCCAAATGCAGCCTGCACTGCA
GGTAGGTAAAATGTCTACCTGTAGTTTGTTCTGTATTTCTTTTTTGTACTATATCACTGTTAGGACAAATGTTTGGATAA
GGTGACTGTTGATTTTGCTGTGTTTTCGAGTACGGGGAGATGATTTTGATGCCCCAACAAGCAAGGTCTTCGAGATTGCA
GGACAGGGCAGGACAATGCTTGGATCGATGACGAAGGTGCATGCATGAATGCATGATTGGTGAAATTAAGTAAGCAAATC
TTTGGGACACTTGACATAGCCAAAACGGGCTGCTTTCCATATCTATCAAACATGCATCACTTTGGTTGAAATGGGTCCGA
CCGACAGCATAAACACAACTTGCTCAACTTGTTGCCCATCAATAATAATATTAAAGCCTGTCTCTCTGTCTGCCTGATAA
CATAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54357.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis