Browse Element(s) Details

Os.53317.1.S1_x_at

Description

gb:AK106610.1
DB_XREF= gi:32991819
TID=Os.53317.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53317 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-112-F07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-112-F07, full insert sequence.
FL= gb:AK106610.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os09g39790	11/11	lipase class 3 family protein, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os09g39710	OsAffx.31174.4.S1_x_at	6/11	9	+	22784556..22786281	retrotransposon protein, putative, unclassified
LOC_Os09g39710	OsAffx.31174.5.S1_x_at	6/11	9	+	22784556..22786281	retrotransposon protein, putative, unclassified
LOC_Os09g39720	Os.12966.1.S1_at	11/11	9	+	22790130..22791505	oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os09g39730	OsAffx.27508.10.S1_s_at	9/11	9	+	22791564..22792383	Core histone H2A/H2B/H3/H4 family protein, expressed
LOC_Os09g39740	Os.47343.2.S1_x_at	11/11	9	+	22792734..22797417	ACT domain-containing protein, putative, expressed
LOC_Os09g39740	Os.47343.2.S1_at	11/11	9	+	22792734..22797417	ACT domain-containing protein, putative, expressed
LOC_Os09g39750	OsAffx.18061.1.S1_at	11/11	9	+	22799910..22801700	expressed protein
LOC_Os09g39760	Os.54835.1.S1_s_at	11/11	9	+	22804201..22806568	Pectinesterase family protein, expressed
LOC_Os09g39760	OsAffx.30215.1.S1_at	11/11	9	+	22804201..22806568	Pectinesterase family protein, expressed
LOC_Os09g39760	OsAffx.23254.1.S1_x_at	1/11	9	+	22804201..22806568	Pectinesterase family protein, expressed
LOC_Os09g39770	Os.10654.1.S1_s_at	11/11	9	+	22805525..22806568	C2 domain containing protein, expressed
LOC_Os09g39780	Os.5492.1.S1_at	11/11	9	+	22809423..22810520	Peptidyl-prolyl cis-trans isomerase, putative, expressed
LOC_Os09g39790	Os.53317.1.S1_x_at	11/11	9	+	22810710..22813586	lipase class 3 family protein, putative, expressed
LOC_Os09g39790	Os.53317.2.S1_at	11/11	9	+	22810710..22813586	lipase class 3 family protein, putative, expressed
LOC_Os09g39800	OsAffx.30216.1.S1_at	11/11	9	+	22817548..22817970	hypothetical protein
LOC_Os09g39810	OsAffx.6536.1.S1_at	11/11	9	+	22821100..22821495	Ethylene-responsive transcription factor 14, putative, expressed
LOC_Os09g39820	OsAffx.21171.3.S1_x_at	2/11	9	+	22828444..22834333	retrotransposon protein, putative, unclassified
LOC_Os09g39820	OsAffx.20729.1.S1_x_at	2/11	9	+	22828444..22834333	retrotransposon protein, putative, unclassified
LOC_Os09g39820	OsAffx.21171.5.S1_x_at	1/11	9	+	22828444..22834333	retrotransposon protein, putative, unclassified
LOC_Os09g39830	OsAffx.22927.2.S1_x_at	1/11	9	+	22834728..22838121	retrotransposon protein, putative, unclassified
LOC_Os09g39830	OsAffx.22894.1.S1_at	1/11	9	+	22834728..22838121	retrotransposon protein, putative, unclassified
LOC_Os09g39830	OsAffx.22711.4.A1_x_at	1/11	9	+	22834728..22838121	retrotransposon protein, putative, unclassified
LOC_Os09g39830	OsAffx.22927.1.S1_x_at	1/11	9	+	22834728..22838121	retrotransposon protein, putative, unclassified
LOC_Os09g39840	NA	NA	9	+	22838562..22839161	retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
GO:0006629	biological_process	lipid metabolism
GO:0004806	molecular_function	triacylglycerol lipase activity
GO:0005516	molecular_function	calmodulin binding

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.53317.1.S1_x_at--986--145	1	Chr09:22811244..22811268 (25 bp)	AGAAGATCTGTTCCTTCCTGGGACT	LOC_Os09g39790
Os.53317.1.S1_x_at--687--1063	1	Chr09:22811230..22811254 (25 bp)	TTCCTGGGACTCTGTATTACCTCAA	LOC_Os09g39790
Os.53317.1.S1_x_at--418--795	1	Chr09:22811125..22811149 (25 bp)	GGATACTGTTATCTGGCAATCTGAT	LOC_Os09g39790
Os.53317.1.S1_x_at--474--271	1	Chr09:22811082..22811106 (25 bp)	AAGCATATATTACGCCCTGAGGGAT	LOC_Os09g39790
Os.53317.1.S1_x_at--606--107	1	Chr09:22811063..22811087 (25 bp)	AGGGATGTGCTCAAGACTCTGCCGC	LOC_Os09g39790
Os.53317.1.S1_x_at--597--917	1	Chr09:22811044..22811068 (25 bp)	TGCCGCCCCAGGAATCAGGATGACA	LOC_Os09g39790
Os.53317.1.S1_x_at--137--283	1	Chr09:22811014..22811038 (25 bp)	AAGTTCCTTTTCAAGCTTTTTGCAG	LOC_Os09g39790
Os.53317.1.S1_x_at--870--501	1	Chr09:22810993..22811017 (25 bp)	GCAGGATAATCTCCATCTATTCTGT	LOC_Os09g39790
Os.53317.1.S1_x_at--546--955	1	Chr09:22810978..22811002 (25 bp)	TCTATTCTGTAGTTTGTCATCTCGA	LOC_Os09g39790
Os.53317.1.S1_x_at--1076--461	1	Chr09:22810926..22810950 (25 bp)	GCTCCTTAGTTCTCCCATGGGTAAA	LOC_Os09g39790
Os.53317.1.S1_x_at--897--983	1	Chr09:22810905..22810929 (25 bp)	TAAAGGCGAAAGTCTGCCGGCTTTG	LOC_Os09g39790

Target Sequence

AGAAGATCTGTTCCTTCCTGGGACTCTGTATTACCTCAAGAGGGACATTGAGGATATAAACGGTGTAGAAGATGAGTCGT
ATACACTCTGGAGAGGTGATGCCGGGGAGAATTTTCAGAGGATACTGTTATCTGGCAATCTGATATCCGATCACAAATGT
GAAAGCATATATTACGCCCTGAGGGATGTGCTCAAGACTCTGCCGCCCCAGGAATCAGGATGACAAGTAGAAGTTCCTTT
TCAAGCTTTTTGCAGGATAATCTCCATCTATTCTGTAGTTTGTCATCTCGATACAATAGAGGAAAGCATATTTTTGTTGC
TCCTTAGTTCTCCCATGGGTAAAGGCGAAAGTCTGCCGGCTTTG

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis