Browse Element(s) Details


Os.5492.1.S1_at

Description gb:AK103109.1
DB_XREF= gi:32988318
TID=Os.5492.1
CNT=17
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.5492 (NCBI UniGene Cluster)
UG_TITLE=Cyclophilin 1 (Cyp1) mRNA, complete cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033119A20, full insert sequence.
FL= gb:AK103109.1 gb:L29471.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3978011/11Peptidyl-prolyl cis-trans isomerase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g39710OsAffx.31174.4.S1_x_at6/119+22784556..22786281retrotransposon protein, putative, unclassified
LOC_Os09g39710OsAffx.31174.5.S1_x_at6/119+22784556..22786281retrotransposon protein, putative, unclassified
LOC_Os09g39720Os.12966.1.S1_at11/119+22790130..22791505oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os09g39730OsAffx.27508.10.S1_s_at9/119+22791564..22792383Core histone H2A/H2B/H3/H4 family protein, expressed
LOC_Os09g39740Os.47343.2.S1_x_at11/119+22792734..22797417ACT domain-containing protein, putative, expressed
LOC_Os09g39740Os.47343.2.S1_at11/119+22792734..22797417ACT domain-containing protein, putative, expressed
LOC_Os09g39750OsAffx.18061.1.S1_at11/119+22799910..22801700expressed protein
LOC_Os09g39760Os.54835.1.S1_s_at11/119+22804201..22806568Pectinesterase family protein, expressed
LOC_Os09g39760OsAffx.30215.1.S1_at11/119+22804201..22806568Pectinesterase family protein, expressed
LOC_Os09g39760OsAffx.23254.1.S1_x_at1/119+22804201..22806568Pectinesterase family protein, expressed
LOC_Os09g39770Os.10654.1.S1_s_at11/119+22805525..22806568C2 domain containing protein, expressed
LOC_Os09g39780Os.5492.1.S1_at11/119+22809423..22810520Peptidyl-prolyl cis-trans isomerase, putative, expressed
LOC_Os09g39790Os.53317.1.S1_x_at11/119+22810710..22813586lipase class 3 family protein, putative, expressed
LOC_Os09g39790Os.53317.2.S1_at11/119+22810710..22813586lipase class 3 family protein, putative, expressed
LOC_Os09g39800OsAffx.30216.1.S1_at11/119+22817548..22817970hypothetical protein
LOC_Os09g39810OsAffx.6536.1.S1_at11/119+22821100..22821495Ethylene-responsive transcription factor 14, putative, expressed
LOC_Os09g39820OsAffx.21171.3.S1_x_at2/119+22828444..22834333retrotransposon protein, putative, unclassified
LOC_Os09g39820OsAffx.20729.1.S1_x_at2/119+22828444..22834333retrotransposon protein, putative, unclassified
LOC_Os09g39820OsAffx.21171.5.S1_x_at1/119+22828444..22834333retrotransposon protein, putative, unclassified
LOC_Os09g39830OsAffx.22927.2.S1_x_at1/119+22834728..22838121retrotransposon protein, putative, unclassified
LOC_Os09g39830OsAffx.22894.1.S1_at1/119+22834728..22838121retrotransposon protein, putative, unclassified
LOC_Os09g39830OsAffx.22711.4.A1_x_at1/119+22834728..22838121retrotransposon protein, putative, unclassified
LOC_Os09g39830OsAffx.22927.1.S1_x_at1/119+22834728..22838121retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
GO:0007165biological_processsignal transduction
GO:0005829cellular_componentcytosol
GO:0003755molecular_functionpeptidyl-prolyl cis-trans isomerase activity
GO:0016018molecular_functioncyclosporin A binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5492.1.S1_at--1130--211Chr09:22810356..22810380 (25 bp)
ATATTAGATTACTTACTTACTAGAG
LOC_Os09g39780
Os.5492.1.S1_at--1142--3651Chr09:22810371..22810395 (25 bp)
CTTACTAGAGTATATTTTCTTCCTT
LOC_Os09g39780
Os.5492.1.S1_at--1156--5191Chr09:22810403..22810427 (25 bp)
GAATTTTGTGACATTGTTCCGTTCT
LOC_Os09g39780
Os.5492.1.S1_at--515--10831Chr09:22810408..22810432 (25 bp)
TTGTGACATTGTTCCGTTCTTCTTC
LOC_Os09g39780
Os.5492.1.S1_at--102--8811Chr09:22810417..22810441 (25 bp)
TGTTCCGTTCTTCTTCTTGTATCAA
LOC_Os09g39780
Os.5492.1.S1_at--446--9291Chr09:22810420..22810444 (25 bp)
TCCGTTCTTCTTCTTGTATCAATAA
LOC_Os09g39780
Os.5492.1.S1_at--174--10211Chr09:22810467..22810491 (25 bp)
TATTTATAACTATGCTCTTAGCCCT
LOC_Os09g39780
Os.5492.1.S1_at--110--351Chr09:22810472..22810496 (25 bp)
ATAACTATGCTCTTAGCCCTCAATG
LOC_Os09g39780
Os.5492.1.S1_at--445--631Chr09:22810478..22810502 (25 bp)
ATGCTCTTAGCCCTCAATGTTATAT
LOC_Os09g39780
Os.5492.1.S1_at--78--4831Chr09:22810480..22810504 (25 bp)
GCTCTTAGCCCTCAATGTTATATAG
LOC_Os09g39780
Os.5492.1.S1_at--814--6791Chr09:22810496..22810520 (25 bp)
GTTATATAGCTATTGCCTTGCTCTG
LOC_Os09g39780
Target Sequence 
ATATTAGATTACTTACTTACTAGAGTATATTTTCTTCCTTTTACAAGGAATTTTGTGACATTGTTCCGTTCTTCTTCTTG
TATCAATAACAATCCAATGTTAGAAAACATTTATTTATAACTATGCTCTTAGCCCTCAATGTTATATAGCTATTGCCTTG
CTCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5492.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis