Browse Element(s) Details


OsAffx.6536.1.S1_at

Description tigr:9637.m03415
TID=OsAffx.6536.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Nicotiana EREBP-3 like
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3981011/11Ethylene-responsive transcription factor 14, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g39740Os.47343.2.S1_x_at11/119+22792734..22797417ACT domain-containing protein, putative, expressed
LOC_Os09g39740Os.47343.2.S1_at11/119+22792734..22797417ACT domain-containing protein, putative, expressed
LOC_Os09g39750OsAffx.18061.1.S1_at11/119+22799910..22801700expressed protein
LOC_Os09g39760Os.54835.1.S1_s_at11/119+22804201..22806568Pectinesterase family protein, expressed
LOC_Os09g39760OsAffx.30215.1.S1_at11/119+22804201..22806568Pectinesterase family protein, expressed
LOC_Os09g39760OsAffx.23254.1.S1_x_at1/119+22804201..22806568Pectinesterase family protein, expressed
LOC_Os09g39770Os.10654.1.S1_s_at11/119+22805525..22806568C2 domain containing protein, expressed
LOC_Os09g39780Os.5492.1.S1_at11/119+22809423..22810520Peptidyl-prolyl cis-trans isomerase, putative, expressed
LOC_Os09g39790Os.53317.1.S1_x_at11/119+22810710..22813586lipase class 3 family protein, putative, expressed
LOC_Os09g39790Os.53317.2.S1_at11/119+22810710..22813586lipase class 3 family protein, putative, expressed
LOC_Os09g39800OsAffx.30216.1.S1_at11/119+22817548..22817970hypothetical protein
LOC_Os09g39810OsAffx.6536.1.S1_at11/119+22821100..22821495Ethylene-responsive transcription factor 14, putative, expressed
LOC_Os09g39820OsAffx.21171.3.S1_x_at2/119+22828444..22834333retrotransposon protein, putative, unclassified
LOC_Os09g39820OsAffx.20729.1.S1_x_at2/119+22828444..22834333retrotransposon protein, putative, unclassified
LOC_Os09g39820OsAffx.21171.5.S1_x_at1/119+22828444..22834333retrotransposon protein, putative, unclassified
LOC_Os09g39830OsAffx.22927.2.S1_x_at1/119+22834728..22838121retrotransposon protein, putative, unclassified
LOC_Os09g39830OsAffx.22894.1.S1_at1/119+22834728..22838121retrotransposon protein, putative, unclassified
LOC_Os09g39830OsAffx.22711.4.A1_x_at1/119+22834728..22838121retrotransposon protein, putative, unclassified
LOC_Os09g39830OsAffx.22927.1.S1_x_at1/119+22834728..22838121retrotransposon protein, putative, unclassified
LOC_Os09g39840NANA9+22838562..22839161retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009873biological_processethylene mediated signaling pathway
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0016563molecular_functiontranscriptional activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6536.1.S1_at--658--1291Chr09:22821377..22821401 (25 bp)
AGATCCGCGACTCGAGCCGGCACGG
LOC_Os09g39810
OsAffx.6536.1.S1_at--273--4491Chr09:22821362..22821386 (25 bp)
GCCGGCACGGCGTCCGCGTGTGGCT
LOC_Os09g39810
OsAffx.6536.1.S1_at--570--451Chr09:22821234..22821258 (25 bp)
ATCTACGCCCGTCAACTACACAATA
LOC_Os09g39810
OsAffx.6536.1.S1_at--1030--9531Chr09:22821233..22821257 (25 bp)
TCTACGCCCGTCAACTACACAATAA
LOC_Os09g39810
OsAffx.6536.1.S1_at--537--9951Chr09:22821231..22821255 (25 bp)
TACGCCCGTCAACTACACAATAATA
LOC_Os09g39810
OsAffx.6536.1.S1_at--976--1811Chr09:22821230..22821254 (25 bp)
ACGCCCGTCAACTACACAATAATAA
LOC_Os09g39810
OsAffx.6536.1.S1_at--987--7071Chr09:22821224..22821248 (25 bp)
GTCAACTACACAATAATAACGCCGC
LOC_Os09g39810
OsAffx.6536.1.S1_at--681--2011Chr09:22821220..22821244 (25 bp)
ACTACACAATAATAACGCCGCTGCT
LOC_Os09g39810
OsAffx.6536.1.S1_at--571--9851Chr09:22821218..22821242 (25 bp)
TACACAATAATAACGCCGCTGCTGG
LOC_Os09g39810
OsAffx.6536.1.S1_at--479--2191Chr09:22821217..22821241 (25 bp)
ACACAATAATAACGCCGCTGCTGGC
LOC_Os09g39810
OsAffx.6536.1.S1_at--1151--351Chr09:22821212..22821236 (25 bp)
ATAATAACGCCGCTGCTGGCTCTTC
LOC_Os09g39810
Target Sequence 
AGATCCGCGACTCGAGCCGGCACGGCGTCCGCGTGTGGCTGGGCACCTTCGACACAGCCGAGGAGGCCGCTCGCGCCTAC
GACCGCTCCGCCTACTCCATGCGCGGCGCCAACGCCGTCCTCAACTTCCCCGCCGACGCCCACATCTACGCCCGTCAACT
ACACAATAATAACGCCGCTGCTGGCTCTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6536.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis