Browse Element(s) Details


Os.37484.1.S1_at

Description gb:AK058267.1
DB_XREF= gi:32968285
TID=Os.37484.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.37484 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-013-A11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-013-A11, full insert sequence.
FL= gb:AK058267.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1257010/11Pre-mRNA cleavage complex II protein Clp1 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g12510OsAffx.28270.3.A1_at10/112+6541264..6543574hypothetical protein
LOC_Os02g12520OsAffx.31445.1.S1_x_at2/112+6548906..6549253lipase class 3 family protein, putative
LOC_Os02g12520OsAffx.31445.1.S1_at2/112+6548906..6549253lipase class 3 family protein, putative
LOC_Os02g12530NANA2+6553794..6554309Cytochrome P450 71D11, putative
LOC_Os02g12540OsAffx.2585.1.S1_at11/112+6556026..6558023Cytochrome P450 family protein
LOC_Os02g12550Os.49199.1.S1_at11/112+6559488..6562188Cytochrome P450 family protein, expressed
LOC_Os02g12560NANA2+6566133..6566588expressed protein
LOC_Os02g12570Os.37484.1.S1_at10/112+6568159..6572501Pre-mRNA cleavage complex II protein Clp1 containing protein, expressed
LOC_Os02g12580Os.10337.2.S1_at11/112+6572766..6577608Serine/threonine protein phosphatase PP2A-3 catalytic subunit, putative, expressed
LOC_Os02g12580Os.10337.1.S1_x_at11/112+6572766..6577608Serine/threonine protein phosphatase PP2A-3 catalytic subunit, putative, expressed
LOC_Os02g12590OsAffx.12007.1.S1_at10/112+6578959..6579539hypothetical protein
LOC_Os02g12600OsAffx.12008.1.S1_x_at11/112+6582328..6587404NOL1/NOP2/sun family protein, expressed
LOC_Os02g12600Os.18147.1.S1_at10/112+6582328..6587404NOL1/NOP2/sun family protein, expressed
LOC_Os02g12610OsAffx.24212.1.S1_at11/112+6587538..6588065Hsp20/alpha crystallin family protein
LOC_Os02g12610OsAffx.24212.1.S1_x_at11/112+6587538..6588065Hsp20/alpha crystallin family protein
LOC_Os02g12620NANA2+6588391..6590160retrotransposon protein, putative, unclassified
LOC_Os02g12630OsAffx.10901.1.S1_at3/112+6591946..6594769retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g12640OsAffx.24213.1.S1_at11/112+6595265..6595657hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005849cellular_componentmRNA cleavage factor complex
GO:0005488molecular_functionbinding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37484.1.S1_at--942--2751NONE
AAGACTAGAAGCTTCCGCATCAAGG
NONE
Os.37484.1.S1_at--38--6431Chr02:6571239..6571263 (25 bp)
GATCTAGCACCACACTCAAATGTTG
LOC_Os02g12570
Os.37484.1.S1_at--798--9591Chr02:6571301..6571325 (25 bp)
TCATCAAGCTCCTAAGTCTGCACTA
LOC_Os02g12570
Os.37484.1.S1_at--183--3331Chr02:6571321..6571345 (25 bp)
CACTACCGATTGGTGCAGAGCCTGT
LOC_Os02g12570
Os.37484.1.S1_at--515--1811Chr02:6571351..6571375 (25 bp)
ACCCTACTCGACTTGTTGCTGTTAA
LOC_Os02g12570
Os.37484.1.S1_at--798--391Chr02:6571377..6571401 (25 bp)
ATCAGCACAGATATGGTCCACACCG
LOC_Os02g12570
Os.37484.1.S1_at--169--4011Chr02:6571400..6571424 (25 bp)
CGTGCTTGCTGTTTCATATGCTAAG
LOC_Os02g12570
Os.37484.1.S1_at--190--5411Chr02:6572234..6572258 (25 bp)
GAAGCTCACATACATTGCACCATGC
LOC_Os02g12570
Os.37484.1.S1_at--912--8091Chr02:6572264..6572288 (25 bp)
GGACCTGCCAAGTAAGCTGTTAATT
LOC_Os02g12570
Os.37484.1.S1_at--854--3151Chr02:6572285..6572309 (25 bp)
AATTGCGAGCTCGTTAACGTGGTAC
LOC_Os02g12570
Os.37484.1.S1_at--220--2471Chr02:6572383..6572407 (25 bp)
AACACAGATGTATCCCTTGTCCTAT
LOC_Os02g12570
Target Sequence 
AAGACTAGAAGCTTCCGCATCAAGGAGTACTTTTATGGCATTGCGAATGATCTAGCACCACACTCAAATGTTGTTAACTT
CAGTGATGTATCTGTTTACAAGATTGGCACTCATCAAGCTCCTAAGTCTGCACTACCGATTGGTGCAGAGCCTGTGGCAG
ACCCTACTCGACTTGTTGCTGTTAACATCAGCACAGATATGGTCCACACCGTGCTTGCTGTTTCATATGCTAAGGAACCT
GATGAAATAGTTTCCAGCAATGTTGCCGGATTCATCCACGTGACAGATGTTGACATCCAAAGGAAGAAGCTCACATACAT
TGCACCATGCCCAGGGGACCTGCCAAGTAAGCTGTTAATTGCGAGCTCGTTAACGTGGTACGANGCTTGATCAGCTCATG
GCAGAACGATCAACGATGTAGCTAGGTGGTCAGTTAAATTAATCAGATGGATGTAACACAGATGTATCCCTTGTCCTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37484.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis