Browse Element(s) Details


Os.37511.1.S1_at

Description gb:AK062421.1
DB_XREF= gi:32972439
TID=Os.37511.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.37511 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-102-G06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-102-G06, full insert sequence.
FL= gb:AK062421.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0556010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g05500NANA5+2715497..2716681F-box domain containing protein, expressed
LOC_Os05g05510Os.54693.1.S1_at11/115+2717725..2719085expressed protein
LOC_Os05g05520OsAffx.2625.1.S1_at4/115+2720693..2726429transposon protein, putative, Mutator sub-class
LOC_Os05g05520Os.50043.1.A1_at1/115+2720693..2726429transposon protein, putative, Mutator sub-class
LOC_Os05g05530Os.38320.2.S1_at4/115+2729709..2736402hypothetical protein
LOC_Os05g05540NANA5+2736704..2737724hypothetical protein
LOC_Os05g05550NANA5+2737879..2739454expressed protein
LOC_Os05g05560Os.37511.1.S1_at10/115+2741273..2742846expressed protein
LOC_Os05g05570NANA5+2743232..2743573Agenet domain containing protein
LOC_Os05g05580NANA5+2745546..2753325expressed protein
LOC_Os05g05590Os.27479.1.S1_at11/115+2755406..2761564sodium/hydrogen exchanger 3 family protein, expressed
LOC_Os05g05590OsAffx.25220.1.S1_at1/115+2755406..2761564sodium/hydrogen exchanger 3 family protein, expressed
LOC_Os05g05600Os.11860.1.S1_at11/115+2764109..2770016ATA15 protein, putative, expressed
LOC_Os05g05600Os.11860.1.S2_at10/115+2764109..2770016ATA15 protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37511.1.S1_at--1072--1091Chr05:2741508..2741532 (25 bp)
AGTGGTACCCCTACGACATCAAGCG
LOC_Os05g05560
Os.37511.1.S1_at--465--5291NONE
GAAGGCGCGTTTGTCAAAGCTGGAA
NONE
Os.37511.1.S1_at--136--9791Chr05:2742582..2742606 (25 bp)
TAAGCGTCGCGGGAAGGGTCCTCCA
LOC_Os05g05560
Os.37511.1.S1_at--423--6691Chr05:2742648..2742672 (25 bp)
GTTGCCTTAATTCTGCATACATCAG
LOC_Os05g05560
Os.37511.1.S1_at--74--4971Chr05:2742662..2742686 (25 bp)
GCATACATCAGTTCCTGGCGTTCAT
LOC_Os05g05560
Os.37511.1.S1_at--857--4031Chr05:2742680..2742704 (25 bp)
CGTTCATCCTGTTTGGGCGCTGAAA
LOC_Os05g05560
Os.37511.1.S1_at--986--6631Chr05:2742714..2742738 (25 bp)
GTTGTCAGCAATGTACTCTTTCTAG
LOC_Os05g05560
Os.37511.1.S1_at--378--7831Chr05:2742741..2742765 (25 bp)
GGTCAAACAAGATCCATTGGCAATG
LOC_Os05g05560
Os.37511.1.S1_at--22--10731Chr05:2742770..2742794 (25 bp)
TTGCTTTCCTTCATCATAAAACCGA
LOC_Os05g05560
Os.37511.1.S1_at--200--9831Chr05:2742786..2742810 (25 bp)
TAAAACCGATGTATTTGTGCTGCCG
LOC_Os05g05560
Os.37511.1.S1_at--942--8691Chr05:2742801..2742825 (25 bp)
TGTGCTGCCGGCATGAATGCAAGAC
LOC_Os05g05560
Target Sequence 
AGTGGTACCCCTACGACATCAAGCGCGACGACCCGCTCGTCATGGCGCGCGAGGAGAAGGCGCGTTTGTCAAAGCTGGAA
ATGCTTAAGCGTCGCGGGAAGGGTCCTCCAAAGAAGGGCCAGGGAAGGCGTGCGGTCAAGAGAAGCAAATAGTTGCCTTA
ATTCTGCATACATCAGTTCCTGGCGTTCATCCTGTTTGGGCGCTGAAATATTTCGTTGTTGTCAGCAATGTACTCTTTCT
AGTAGGTCAAACAAGATCCATTGGCAATGAAATTTGCTTTCCTTCATCATAAAACCGATGTATTTGTGCTGCCGGCATGA
ATGCAAGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37511.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis