Browse Element(s) Details


Os.54693.1.S1_at

Description gb:AK106485.1
DB_XREF= gi:32991694
TID=Os.54693.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54693 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-104-H02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-104-H02, full insert sequence.
FL= gb:AK106485.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0551011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g05450Os.18996.1.S1_at11/115+2691919..2694811MA3 domain-containing protein, putative, expressed
LOC_Os05g05460NANA5+2694161..2696328EF hand family protein, expressed
LOC_Os05g05470Os.4990.1.S1_at9/115+2696825..2701454T-complex protein 1, zeta subunit, putative, expressed
LOC_Os05g05480Os.10700.1.S1_at11/115+2703713..2711749DegP2 protease, putative, expressed
LOC_Os05g05490Os.57324.1.S1_at10/115+2712277..2715019pentatricopeptide, putative, expressed
LOC_Os05g05500NANA5+2715497..2716681F-box domain containing protein, expressed
LOC_Os05g05510Os.54693.1.S1_at11/115+2717725..2719085expressed protein
LOC_Os05g05520OsAffx.2625.1.S1_at4/115+2720693..2726429transposon protein, putative, Mutator sub-class
LOC_Os05g05520Os.50043.1.A1_at1/115+2720693..2726429transposon protein, putative, Mutator sub-class
LOC_Os05g05530Os.38320.2.S1_at4/115+2729709..2736402hypothetical protein
LOC_Os05g05540NANA5+2736704..2737724hypothetical protein
LOC_Os05g05550NANA5+2737879..2739454expressed protein
LOC_Os05g05560Os.37511.1.S1_at10/115+2741273..2742846expressed protein
LOC_Os05g05570NANA5+2743232..2743573Agenet domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54693.1.S1_at--908--1291Chr05:2718270..2718294 (25 bp)
AGATGAAGCTCTCGATCCTCGACCT
LOC_Os05g05510
Os.54693.1.S1_at--736--691Chr05:2718169..2718193 (25 bp)
ATGAGCGACGACTTCTGCCTCGAGA
LOC_Os05g05510
Os.54693.1.S1_at--876--971Chr05:2718090..2718114 (25 bp)
AGGAGACTCCATGGACGCTCGAGGA
LOC_Os05g05510
Os.54693.1.S1_at--360--6191Chr05:2718070..2718094 (25 bp)
GAGGACACCTCGGTGAGGTTCTACA
LOC_Os05g05510
Os.54693.1.S1_at--393--9871Chr05:2718049..2718073 (25 bp)
TACAGGGCGCTGGAAAGCATGCTCG
LOC_Os05g05510
Os.54693.1.S1_at--1081--4511Chr05:2717985..2718009 (25 bp)
GCCGCGGCTACGAGTTCGAGATCGT
LOC_Os05g05510
Os.54693.1.S1_at--508--4811Chr05:2717915..2717939 (25 bp)
GCTCTCCATTGATCTCAAGACCATG
LOC_Os05g05510
Os.54693.1.S1_at--78--3511Chr05:2717894..2717918 (25 bp)
CATGGAGCTCACAAGGCTATCGGAG
LOC_Os05g05510
Os.54693.1.S1_at--460--6391Chr05:2717849..2717873 (25 bp)
GATCTACCCGTACACCATGGCGTGG
LOC_Os05g05510
Os.54693.1.S1_at--838--9391Chr05:2717818..2717842 (25 bp)
TCGTTCCTGAATCCTACCGACTAGG
LOC_Os05g05510
Os.54693.1.S1_at--870--9931Chr05:2717804..2717828 (25 bp)
TACCGACTAGGTGCCCGATGATCAA
LOC_Os05g05510
Target Sequence 
AGATGAAGCTCTCGATCCTCGACCTCCCGCCATTCCCCGCGACGCTCGCCTTCGACGTCATCGACACGGAGGACGACGAC
GACGGGCTCCGCGTGCTCGCCATGAGCGACGACTTCTGCCTCGAGACCTGGAAGCTCTCCTCCGCCGCCACCGCTGCCGC
CATCGACGACGACGAGGAGGAGGAGACTCCATGGACGCTCGAGGACACCTCGGTGAGGTTCTACAGGGCGCTGGAAAGCA
TGCTCGGCGAGCGAAAGCTGAGCGACCGCCACCGCCGCCGCCGCCGCCGCGGCTACGAGTTCGAGATCGTCGGAGTGGTC
GACGGCTTCTTCTTCTTCCGCCAATCCGGCGTCCTGCTCTCCATTGATCTCAAGACCATGGAGCTCACAAGGCTATCGGA
GCAGGATTGCTCGCCGGCGACGATCTACCCGTACACCATGGCGTGGCCGCCGTCGTTCCTGAATCCTACCGACTAGGTGC
CCGATGATCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54693.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis