Browse Element(s) Details


Os.18996.1.S1_at

Description gb:AK064493.1
DB_XREF= gi:32974511
TID=Os.18996.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.18996 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-111-C07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-111-C07, full insert sequence.
FL= gb:AK064493.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0545011/11MA3 domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g05420OsAffx.22947.1.S1_x_at6/115+2668033..2674416retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g05420OsAffx.22947.5.S1_x_at3/115+2668033..2674416retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g05420OsAffx.22947.3.S1_x_at2/115+2668033..2674416retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g05430OsAffx.14557.1.S1_at10/115+2677359..2677797hypothetical protein
LOC_Os05g05440Os.19380.1.S1_at11/115+2681413..2689941expressed protein
LOC_Os05g05450Os.18996.1.S1_at11/115+2691919..2694811MA3 domain-containing protein, putative, expressed
LOC_Os05g05460NANA5+2694161..2696328EF hand family protein, expressed
LOC_Os05g05470Os.4990.1.S1_at9/115+2696825..2701454T-complex protein 1, zeta subunit, putative, expressed
LOC_Os05g05480Os.10700.1.S1_at11/115+2703713..2711749DegP2 protease, putative, expressed
LOC_Os05g05490Os.57324.1.S1_at10/115+2712277..2715019pentatricopeptide, putative, expressed
LOC_Os05g05500NANA5+2715497..2716681F-box domain containing protein, expressed
LOC_Os05g05510Os.54693.1.S1_at11/115+2717725..2719085expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18996.1.S1_at--947--4711Chr05:2694231..2694255 (25 bp)
GCTGGCAAATTTTACACTCTCACTT
LOC_Os05g05450
Os.18996.1.S1_at--833--2991Chr05:2694321..2694345 (25 bp)
AATGCTGTTTGAGACCTTACTACAA
LOC_Os05g05450
Os.18996.1.S1_at--1036--591Chr05:2694353..2694377 (25 bp)
ATGCGGTGGTGTGGAACGTCTTTAC
LOC_Os05g05450
Os.18996.1.S1_at--50--10491Chr05:2694374..2694398 (25 bp)
TTACACGCATTGCTGGACTTCCAGA
LOC_Os05g05450
Os.18996.1.S1_at--253--8911Chr05:2694410..2694434 (25 bp)
TGAGAGATGGCCTCGTGCTATTCAT
LOC_Os05g05450
Os.18996.1.S1_at--38--5511Chr05:2694457..2694481 (25 bp)
GACACCGGTAAGGACTTGGCTAGCA
LOC_Os05g05450
Os.18996.1.S1_at--147--8751Chr05:2694565..2694589 (25 bp)
TGTACCCATTTTTGACTCTGTGTCC
LOC_Os05g05450
Os.18996.1.S1_at--170--9631Chr05:2694616..2694640 (25 bp)
TCATGTGACACAGCTCTAGGTTGTA
LOC_Os05g05450
Os.18996.1.S1_at--477--10351Chr05:2694674..2694698 (25 bp)
TTTTTTCTAAGTTACCCACATGAGG
LOC_Os05g05450
Os.18996.1.S1_at--779--8671Chr05:2694717..2694741 (25 bp)
TGTGTGACACTGATGCATTCGCAAT
LOC_Os05g05450
Os.18996.1.S1_at--25--5571Chr05:2694744..2694768 (25 bp)
GAAAGCTTGTCCTGAGAGACCTTGA
LOC_Os05g05450
Target Sequence 
GCTGGCAAATTTTACACTCTCACTTGCAACCCTGAAGGTTGTCAAAAACCTGGCAGTGGAGGTGATTCCAAAAAGGACCA
TTCATTTCCGAATGCTGTTTGAGACCTTACTACAAAAGGATGATGCGGTGGTGTGGAACGTCTTTACACGCATTGCTGGA
CTTCCAGAGCTTGAAATTTTGAGAGATGGCCTCGTGCTATTCATCAAGCAGCATGTTATTGCTAAGGACACCGGTAAGGA
CTTGGCTAGCAAATTCAAGATCGCAAAGAAAGCGCTTGATAATACTGCTGGAGTTTTGATGTAATTTGTCTGACATTTCA
AGGTGTTACCTCCCTGTACCCATTTTTGACTCTGTGTCCCTCCAGTTTACCTANTACAACTAGCAATCATGTGACACAGC
TCTAGGTTGTAGGNTTCATTATTGTGCTCTGAGAAATCAGAGGATNTTTTTTCTAAGTTACCCACATGAGGAATTTGAGA
GAATCTTCATGTGTGACACTGATGCATTCGCAATTAGAAAGCTTGTCCTGAGAGACCTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18996.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis