Browse Element(s) Details


Os.19380.1.S1_at

Description gb:AK109133.1
DB_XREF= gi:32994342
TID=Os.19380.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.19380 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-155-D12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-155-D12, full insert sequence.
FL= gb:AK109133.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0544011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g05390OsAffx.14556.1.S1_at11/115+2650647..2657552expressed protein
LOC_Os05g05390OsAffx.26617.5.S1_x_at2/115+2650647..2657552expressed protein
LOC_Os05g05400NANA5+2661786..2662555retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g05410NANA5+2663080..2665837retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g05420OsAffx.22947.1.S1_x_at6/115+2668033..2674416retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g05420OsAffx.22947.5.S1_x_at3/115+2668033..2674416retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g05420OsAffx.22947.3.S1_x_at2/115+2668033..2674416retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g05430OsAffx.14557.1.S1_at10/115+2677359..2677797hypothetical protein
LOC_Os05g05440Os.19380.1.S1_at11/115+2681413..2689941expressed protein
LOC_Os05g05450Os.18996.1.S1_at11/115+2691919..2694811MA3 domain-containing protein, putative, expressed
LOC_Os05g05460NANA5+2694161..2696328EF hand family protein, expressed
LOC_Os05g05470Os.4990.1.S1_at9/115+2696825..2701454T-complex protein 1, zeta subunit, putative, expressed
LOC_Os05g05480Os.10700.1.S1_at11/115+2703713..2711749DegP2 protease, putative, expressed
LOC_Os05g05490Os.57324.1.S1_at10/115+2712277..2715019pentatricopeptide, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005622cellular_componentintracellular
GO:0003713molecular_functiontranscription coactivator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19380.1.S1_at--564--3011Chr05:2682218..2682242 (25 bp)
AATGCAGATTCCAACATCCTCCATT
LOC_Os05g05440
Os.19380.1.S1_at--440--3811Chr05:2682200..2682224 (25 bp)
CTCCATTGGTTGCAAGCCAGAACTT
LOC_Os05g05440
Os.19380.1.S1_at--1101--9171Chr05:2682176..2682200 (25 bp)
TGCCGTGCTCGCTAGAGTAAGTGGT
LOC_Os05g05440
Os.19380.1.S1_at--335--2871Chr05:2682158..2682182 (25 bp)
AAGTGGTGATGATCTCGTGGCCGCC
LOC_Os05g05440
Os.19380.1.S1_at--180--9431Chr05:2682144..2682168 (25 bp)
TCGTGGCCGCCTTGTATGAACAGGG
LOC_Os05g05440
Os.19380.1.S1_at--782--8231Chr05:2682121..2682145 (25 bp)
GGCAACATCTGTAGGGCGCATATCA
LOC_Os05g05440
Os.19380.1.S1_at--372--2091Chr05:2682097..2682121 (25 bp)
ACATCCTTCCAGACACTATGACGAT
LOC_Os05g05440
Os.19380.1.S1_at--189--6971Chr05:2682005..2682029 (25 bp)
GTAGCTCAGGAGCACCGTTGCTTAA
LOC_Os05g05440
Os.19380.1.S1_at--443--5091Chr05:2681994..2682018 (25 bp)
GCACCGTTGCTTAATTGCAGAGCCA
LOC_Os05g05440
Os.19380.1.S1_at--191--9631Chr05:2681928..2681952 (25 bp)
TCATGCTTTGTTTCACTTTCTGATA
LOC_Os05g05440
Os.19380.1.S1_at--949--5811Chr05:2681707..2681731 (25 bp)
GACCCTCCACCATGTTGTGATATTG
LOC_Os05g05440
Target Sequence 
AATGCAGATTCCAACATCCTCCATTGGTTGCAAGCCAGAACTTGCCGTGCTCGCTAGAGTAAGTGGTGATGATCTCGTGG
CCGCCTTGTATGAACAGGGCAACATCTGTAGGGCGCATATCACATCCTTCCAGACACTATGACGATGTCAGTAACACCAA
TGAGTATGGCTATAATATGAATTTAATTGAGGTGGATATGATGGTAGCAGAGGGTAGCTCAGGAGCACCGTTGCTTAATT
GCAGAGCCAATTTTGTTGGTCTACTTCAAGGAGGTGGTAAGGAATGTTTTTCATGCTTTGTTTCACTTTCTGATATATGT
AAGAAGCTAACTGAGTGGGGAATTTTTCCTCGAGAGAAGGTGATTCAACAAAAGAAATCACAGAAGTGACAACTGATTCA
TCATTGAAGCACNTTGGATAGTAGAGCANAACGTCCANTTGAATTTTGTTTCAGATGTTTTTACTCGTTGACACNTGTAG
CACAGATTCTGTTTAAAGTTTTGCATGGTTTGGTGACCCTCCACCATGTTGTGATATTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19380.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis