Browse Element(s) Details


Os.4990.1.S1_at

Description gb:AK062146.1
DB_XREF= gi:32972164
TID=Os.4990.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.4990 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013048I04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-045-G12, full insert sequence.
FL= gb:AK065883.1 gb:AK062146.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g054709/11T-complex protein 1, zeta subunit, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g05420OsAffx.22947.1.S1_x_at6/115+2668033..2674416retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g05420OsAffx.22947.5.S1_x_at3/115+2668033..2674416retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g05420OsAffx.22947.3.S1_x_at2/115+2668033..2674416retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g05430OsAffx.14557.1.S1_at10/115+2677359..2677797hypothetical protein
LOC_Os05g05440Os.19380.1.S1_at11/115+2681413..2689941expressed protein
LOC_Os05g05450Os.18996.1.S1_at11/115+2691919..2694811MA3 domain-containing protein, putative, expressed
LOC_Os05g05460NANA5+2694161..2696328EF hand family protein, expressed
LOC_Os05g05470Os.4990.1.S1_at9/115+2696825..2701454T-complex protein 1, zeta subunit, putative, expressed
LOC_Os05g05480Os.10700.1.S1_at11/115+2703713..2711749DegP2 protease, putative, expressed
LOC_Os05g05490Os.57324.1.S1_at10/115+2712277..2715019pentatricopeptide, putative, expressed
LOC_Os05g05500NANA5+2715497..2716681F-box domain containing protein, expressed
LOC_Os05g05510Os.54693.1.S1_at11/115+2717725..2719085expressed protein
LOC_Os05g05520OsAffx.2625.1.S1_at4/115+2720693..2726429transposon protein, putative, Mutator sub-class
LOC_Os05g05520Os.50043.1.A1_at1/115+2720693..2726429transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
GO:0005737cellular_componentcytoplasm
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4990.1.S1_at--10--751Chr05:2697326..2697429 (25 bp)
ATGTTATTGTCTCTCTCCAGAATGA
LOC_Os05g05470
Os.4990.1.S1_at--978--9451Chr05:2697264..2697288 (25 bp)
TCTGGCGAACCAATTGATCCCCAAA
LOC_Os05g05470
Os.4990.1.S1_at--1107--8271Chr05:2697234..2697258 (25 bp)
GGCATCTTCGACAATTACTCCGTGA
LOC_Os05g05470
Os.4990.1.S1_at--81--5551Chr05:2697212..2697235 (24 bp)
GAAACGCCAGATCATCAATTCCGGA
LOC_Os05g05470
Os.4990.1.S1_at--727--9611Chr05:2697108..2697132 (25 bp)
TCATCGCGTCACAGTTATTGCTTGT
LOC_Os05g05470
Os.4990.1.S1_at--314--4751Chr05:2697020..2697044 (25 bp)
GCTGAGTCCTCTGTTTTGTGGGAGA
LOC_Os05g05470
Os.4990.1.S1_at--939--7871Chr05:2696978..2697002 (25 bp)
GGTTATTTTGCCTTTCTATCTTTAG
LOC_Os05g05470
Os.4990.1.S1_at--509--3691Chr05:2696910..2696934 (25 bp)
CTAGTTTGTTCCTCTTTGACTGTAA
LOC_Os05g05470
Os.4990.1.S1_at--1083--2171Chr05:2696861..2696885 (25 bp)
ACACTGTCATTTATGCCGTCCTGAT
LOC_Os05g05470
Os.4990.1.S1_at--473--4891Chr05:2696811..2696835 (25 bp)
GCTTTCATGTCATTTGTTCTCACGT
NONE
Os.4990.1.S1_at--1083--8891Chr05:2696753..2696777 (25 bp)
TGAGTTGTCGATTACCCATTTGCTT
NONE
Target Sequence 
ATGTTATTGTCTCTCTCCAGAATGAACATGATCGTGGATTGGTGGTGGGATTGAACCNATCACTCTGGCGAACCAATTGA
TCCCCAAATGGAGGGCATCTTCGACAATTACTCCGTGAAACGCCAGATCATCAATTCCGGACCCATCATCGCGTCACAGT
TATTGCTTGTGGATGAAGTGATCAGGGCTGGCCGCAACATGAGGAAACCAACCTAATACTTTCCCTACCTGCCGCTGAGT
CCTCTGTTTTGTGGGAGATATTACGCATTTTGTTTGGTTATTTTGCCTTTCTATCTTTAGTTTGTGCGTAGTAGTGAGGT
GGGTGAAATGTCCGGAGGTTCTGCTAGTTTGTTCCTCTTTGACTGTAACAGATTTCACTTGTAATCTTTGTNACACTGTC
ATTTATGCCGTCCTGATGATTTGGGAATCAGTATGTGCTTATGCTTTCATGTCATTTGTTCTCACGTTGAACTAAGCGGA
ATGCACCAAATTTTGTTTGGTGAGTTGTCGATTACCCATTTGCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4990.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis