Browse Element(s) Details


Os.10700.1.S1_at

Description gb:AK065630.1
DB_XREF= gi:32975648
TID=Os.10700.1
CNT=19
FEA=FLmRNA
TIER=FL+Stack
STK=11
UG=Os.10700 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013072E14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013029I18, full insert sequence.
FL= gb:AK065630.1 gb:AK059221.1 gb:AK071919.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0548011/11DegP2 protease, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g05440Os.19380.1.S1_at11/115+2681413..2689941expressed protein
LOC_Os05g05450Os.18996.1.S1_at11/115+2691919..2694811MA3 domain-containing protein, putative, expressed
LOC_Os05g05460NANA5+2694161..2696328EF hand family protein, expressed
LOC_Os05g05470Os.4990.1.S1_at9/115+2696825..2701454T-complex protein 1, zeta subunit, putative, expressed
LOC_Os05g05480Os.10700.1.S1_at11/115+2703713..2711749DegP2 protease, putative, expressed
LOC_Os05g05490Os.57324.1.S1_at10/115+2712277..2715019pentatricopeptide, putative, expressed
LOC_Os05g05500NANA5+2715497..2716681F-box domain containing protein, expressed
LOC_Os05g05510Os.54693.1.S1_at11/115+2717725..2719085expressed protein
LOC_Os05g05520OsAffx.2625.1.S1_at4/115+2720693..2726429transposon protein, putative, Mutator sub-class
LOC_Os05g05520Os.50043.1.A1_at1/115+2720693..2726429transposon protein, putative, Mutator sub-class
LOC_Os05g05530Os.38320.2.S1_at4/115+2729709..2736402hypothetical protein
LOC_Os05g05540NANA5+2736704..2737724hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0010206biological_processphotosystem II repair
GO:0009533cellular_componentchloroplast stromal thylakoid
GO:0009535cellular_componentthylakoid membrane (sensu Viridiplantae)
GO:0004252molecular_functionserine-type endopeptidase activity
GO:0004295molecular_functiontrypsin activity
GO:0008236molecular_functionserine-type peptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10700.1.S1_at--451--10691Chr05:2710999..2711113 (25 bp)
TTGCCCACCTTGTTGACAACTGCAA
LOC_Os05g05480
Os.10700.1.S1_at--251--5351Chr05:2711139..2711163 (25 bp)
GAAGACGACTTCCTAGTTGTTTTGG
LOC_Os05g05480
Os.10700.1.S1_at--84--5711Chr05:2711177..2711201 (25 bp)
GACTACCGCATCATCAGATATCCTA
LOC_Os05g05480
Os.10700.1.S1_at--1025--5191Chr05:2711211..2711235 (25 bp)
GCAATTCCCTCTGTAAGGTCATCTG
LOC_Os05g05480
Os.10700.1.S1_at--614--10171Chr05:2711239..2711263 (25 bp)
TATCAGAGCCATATGTCGACACAGA
LOC_Os05g05480
Os.10700.1.S1_at--1057--5631Chr05:2711298..2711322 (25 bp)
GACAGCCCTGTCACAAACTATGAAA
LOC_Os05g05480
Os.10700.1.S1_at--916--10751Chr05:2711329..2711353 (25 bp)
TTGACTGTCTCCTCTGGGCATGAAC
LOC_Os05g05480
Os.10700.1.S1_at--475--5571Chr05:2711426..2711450 (25 bp)
GAAAGAGCATTTCCCCACCATGTTG
LOC_Os05g05480
Os.10700.1.S1_at--814--6651Chr05:2711447..2711471 (25 bp)
GTTGAAATCCACTCCATAGAGGCGA
LOC_Os05g05480
Os.10700.1.S1_at--138--8391Chr05:2711467..2711491 (25 bp)
GGCGAAGCCGGAGTCATGTTTGTTA
LOC_Os05g05480
Os.10700.1.S1_at--1064--551Chr05:2711625..2711649 (25 bp)
ATCCTGTAATTTTTTGGGCATGCAA
LOC_Os05g05480
Target Sequence 
TTGCCCACCTTGTTGACAACTGCAAAGACAAGTTCTTGACGTTCGAATTCGAAGACGACTTCCTAGTTGTTTTGGATCGG
GAAGAAGCGACTACCGCATCATCAGATATCCTAAAGGAACATGCAATTCCCTCTGTAAGGTCATCTGATCTATCAGAGCC
ATATGTCGACACAGAGCAAGAAATCCAAAAACCAAACGATGATTTTGGTGACAGCCCTGTCACAAACTATGAAATGGGAG
TTGACTGTCTCCTCTGGGCATGAACAGCCAAGGATGGAATTTGAATTTCAGTTCAAACAGTGACAATGCCGGTGAATTTC
ATGCATCTGGATGGCAGGAAAGAGCATTTCCCCACCATGTTGAAATCCACTCCATAGAGGCGAAGCCGGAGTCATGTTTG
TTAGTGTAGGAAGTTCAGAGTTATGTTGTACCTTAGAAAACCACACAAATGCTTGATTCATCATCAATTTTTTTAGGGGA
TGGGACTATGGGACTGTGGGAGATTGGGGGAGGGCTGTAGAATTTGGCAGGGTGTAATCCTGTAATTTTTTGGGCATGCA
A

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10700.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis