Browse Element(s) Details


Os.57324.1.S1_at

Description gb:AK111304.1
DB_XREF= gi:32996513
TID=Os.57324.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57324 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-181-B07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-181-B07, full insert sequence.
FL= gb:AK111304.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0549010/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g05440Os.19380.1.S1_at11/115+2681413..2689941expressed protein
LOC_Os05g05450Os.18996.1.S1_at11/115+2691919..2694811MA3 domain-containing protein, putative, expressed
LOC_Os05g05460NANA5+2694161..2696328EF hand family protein, expressed
LOC_Os05g05470Os.4990.1.S1_at9/115+2696825..2701454T-complex protein 1, zeta subunit, putative, expressed
LOC_Os05g05480Os.10700.1.S1_at11/115+2703713..2711749DegP2 protease, putative, expressed
LOC_Os05g05490Os.57324.1.S1_at10/115+2712277..2715019pentatricopeptide, putative, expressed
LOC_Os05g05500NANA5+2715497..2716681F-box domain containing protein, expressed
LOC_Os05g05510Os.54693.1.S1_at11/115+2717725..2719085expressed protein
LOC_Os05g05520OsAffx.2625.1.S1_at4/115+2720693..2726429transposon protein, putative, Mutator sub-class
LOC_Os05g05520Os.50043.1.A1_at1/115+2720693..2726429transposon protein, putative, Mutator sub-class
LOC_Os05g05530Os.38320.2.S1_at4/115+2729709..2736402hypothetical protein
LOC_Os05g05540NANA5+2736704..2737724hypothetical protein
LOC_Os05g05550NANA5+2737879..2739454expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57324.1.S1_at--973--2911Chr05:2713987..2714011 (25 bp)
AAGGAGGTTCACTCTTTCGTTGTCA
LOC_Os05g05490
Os.57324.1.S1_at--348--2511Chr05:2714016..2714040 (25 bp)
AACATCTCATCCTAATTCAGCTGCT
LOC_Os05g05490
Os.57324.1.S1_at--368--3831Chr05:2714039..2714063 (25 bp)
CTGCTGTTCGTTGATGATGTGCTGC
LOC_Os05g05490
Os.57324.1.S1_at--118--4771Chr05:2714059..2714083 (25 bp)
GCTGCATCATCTGTCCAGTGATCAA
LOC_Os05g05490
Os.57324.1.S1_at--131--5511NONE
GAACACCGCTTTGTGAGGTTTCAGA
NONE
Os.57324.1.S1_at--657--6911Chr05:2714608..2714632 (25 bp)
GTATGCACCCTCAAAGTCAAAGCCA
LOC_Os05g05490
Os.57324.1.S1_at--1125--2351Chr05:2714626..2714650 (25 bp)
AAAGCCATAGAGATTCGCCGTCTGA
LOC_Os05g05490
Os.57324.1.S1_at--1061--7351Chr05:2714654..2714678 (25 bp)
GTGAACGACTCAACTGTCATCTTCC
LOC_Os05g05490
Os.57324.1.S1_at--648--1051Chr05:2714762..2714786 (25 bp)
AGGGTAGCAAGAACAGCTTCCCGGC
LOC_Os05g05490
Os.57324.1.S1_at--496--4651Chr05:2714825..2714849 (25 bp)
GCGTGACACGTACGCCAACTGGAAG
LOC_Os05g05490
Os.57324.1.S1_at--833--8191Chr05:2714845..2714869 (25 bp)
GGAAGATCATTTCTGCACCAACATC
LOC_Os05g05490
Target Sequence 
AAGGAGGTTCACTCTTTCGTTGTCAGATCAACATCTCATCCTAATTCAGCTGCTGCTGTTCGTTGATGATGTGCTGCATC
ATCTGTCCAGTGATCAAGACCTGATGGAGAACACCGCTTTGTGAGGTTTCAGAGTACCGAAAGAAGTATGCACCCTCAAA
GTCAAAGCCATAGAGATTCGCCGTCTGAGATGTGAACGACTCAACTGTCATCTTCCTCCGGTGTCGCGCGCCGCCGCCGC
ACCATGGACGTCGTCAGCATCGTCGGGCTACAGGACGACGGCAGCGAGCCGGCAACCGGAGGGTAGCAAGAACAGCTTCC
CGGCGGCCAGTTCACGCCGGCGAAGGTCGCAGGGTGAGGATGGCGTGACACGTACGCCAACTGGAAGATCATTTCTGCAC
CAACATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57324.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis