Browse Element(s) Details


Os.37563.1.S1_at

Description gb:AK102391.1
DB_XREF= gi:32987600
TID=Os.37563.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.37563 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033092E15, full insert sequence.
FL= gb:AK102391.1 gb:AK058666.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1629011/11DNA gyrase, B subunit family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g16250Os.49712.1.S1_at11/111+9198156..9199174expressed protein
LOC_Os01g16260Os.10292.1.S1_at9/111+9201107..9208445transporter, putative, expressed
LOC_Os01g16260Os.57395.1.S1_at1/111+9201107..9208445transporter, putative, expressed
LOC_Os01g16270NANA1+9212477..9216283retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g16280NANA1+9217884..9218306hypothetical protein
LOC_Os01g16290Os.37563.1.S1_at11/111+9222015..9233827DNA gyrase, B subunit family protein, expressed
LOC_Os01g16300NANA1+9240343..9240627hypothetical protein
LOC_Os01g16310Os.68.1.S1_at11/111+9242430..9250049Glycosyl hydrolases family 31 protein, expressed
LOC_Os01g16320OsAffx.22199.2.S1_x_at11/111+9250836..9253424uncharacterized plant-specific domain TIGR01570 family protein
LOC_Os01g16330Os.21056.1.S1_at11/111+9255941..9261124UBA/TS-N domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006259biological_processDNA metabolism
GO:0006265biological_processDNA topological change
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0005739cellular_componentmitochondrion
GO:0003677molecular_functionDNA binding
GO:0003918molecular_functionDNA topoisomerase (ATP-hydrolyzing) activity
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37563.1.S1_at--761--2791Chr01:9233155..9233179 (25 bp)
AAGATGCTGCTGAGGCCAACGTTGT
LOC_Os01g16290
Os.37563.1.S1_at--982--3251Chr01:9233171..9233195 (25 bp)
CAACGTTGTGTTCTCATCTCTTATG
LOC_Os01g16290
Os.37563.1.S1_at--257--211Chr01:9233186..9233206 (21 bp)
ATCTCTTATGGGTACCCGGGTTGAT
LOC_Os01g16290
Os.37563.1.S1_at--930--4991Chr01:9233328..9233352 (25 bp)
GCATGGTCAACCTAGAACACCTTGA
LOC_Os01g16290
Os.37563.1.S1_at--935--5491Chr01:9233342..9233366 (25 bp)
GAACACCTTGATATTTGAGCACATT
LOC_Os01g16290
Os.37563.1.S1_at--355--91Chr01:9233364..9233388 (25 bp)
ATTCGGCAATGCTGACAGTCGTGTA
LOC_Os01g16290
Os.37563.1.S1_at--57--6051Chr01:9233397..9233421 (25 bp)
GAGATTATCCACTGTTTCAATCCCC
LOC_Os01g16290
Os.37563.1.S1_at--467--5971Chr01:9233608..9233632 (25 bp)
GAGACAGTTCGGTTGTGGTCACGTT
LOC_Os01g16290
Os.37563.1.S1_at--698--8171Chr01:9233681..9233705 (25 bp)
GGAAGACGTAATCCCCTGACAGGCG
LOC_Os01g16290
Os.37563.1.S1_at--245--2791Chr01:9233716..9233740 (25 bp)
AAGAGTAATCCCCTGCTAGTAGTAA
LOC_Os01g16290
Os.37563.1.S1_at--218--1251Chr01:9233766..9233790 (25 bp)
AGTTGTTAATGTTTCTTTCGCCTGT
LOC_Os01g16290
Target Sequence 
AAGATGCTGCTGAGGCCAACGTTGTGTTCTCATCTCTTATGGGTACCCGGGTTGATGTCAGGAAGCAACTGATCCAGAAT
GCTGCAAGCATGGTCAACCTAGAACACCTTGATATTTGAGCACATTCGGCAATGCTGACAGTCGTGTATGTTACAGGAGA
TTATCCACTGTTTCAATCCCCTCCCACAGGAACCAAGCGTAGCAAACTTGAATTCCTTGCCAACATTGTTTTGGTGCTAA
TTTAGCAGTAAATGTAGGCTAGGGAAGAAACCAGAAATGATTTCATGGGGTTTAATTCCTTGCCAGGGGAGCTGTCAACT
CCCCTANNACATNACACAATTACTGCCTAATTAACTGGTATATCTGGGAGACAGTTCGGTTGTGGTCACGTTGTAAGTTG
GAACTCGTTATGACATTGGGGGTAATCTTCCCTTGCTAGGGGAAGACGTAATCCCCTGACAGGCGGACACTTACAAAGAG
TAATCCCCTGCTAGTAGTAAGTATTACTAGTAAGTATTCAGGAGTAGTTGTTAATGTTTCTTTCGCCTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37563.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis