Browse Element(s) Details


Os.37705.1.S1_at

Description gb:AK065777.1
DB_XREF= gi:32975795
TID=Os.37705.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.37705 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013036N21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013036N21, full insert sequence.
FL= gb:AK065777.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5127010/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g51230NANA3+29256658..29261890Swi2/Snf2-related protein DDM1, putative
LOC_Os03g51240Os.8114.1.A1_x_at11/113+29263297..29266366Glucan endo-1,3-beta-glucosidase 7 precursor, putative, expressed
LOC_Os03g51250Os.7617.1.S1_at10/113+29266372..29271332cyclase-associated protein, putative, expressed
LOC_Os03g51250OsAffx.25678.1.S1_at9/113+29266372..29271332cyclase-associated protein, putative, expressed
LOC_Os03g51260Os.51121.1.S1_x_at11/113+29274436..29276866expressed protein
LOC_Os03g51264OsAffx.3573.1.S1_at11/113+29276075..29277289hypothetical protein
LOC_Os03g51270Os.37705.2.S1_x_at11/113+29279565..29287121F-box domain containing protein, expressed
LOC_Os03g51270Os.37705.1.S1_at10/113+29279565..29287121F-box domain containing protein, expressed
LOC_Os03g51270Os.49942.1.S2_at1/113+29279565..29287121F-box domain containing protein, expressed
LOC_Os03g51280NANA3+29292939..29296006transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g51290Os.47463.1.S1_x_at5/113+29298810..29302507transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g51290Os.14491.2.S1_x_at4/113+29298810..29302507transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g51310NANA3+29304065..29309694retrotransposon protein, putative, unclassified
LOC_Os03g51320NANA3+29310848..29314138retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37705.1.S1_at--717--5451NONE
GAACTGGAACTGCACTTTCGCTTCT
NONE
Os.37705.1.S1_at--73--9971Chr03:29280054..29280078 (25 bp)
TACCGTATCGGCATGACAAGCTCAA
LOC_Os03g51270
Os.37705.1.S1_at--175--2071Chr03:29279973..29279997 (25 bp)
ACATTCGTCGTTGTGCTAGTAGACT
LOC_Os03g51270
Os.37705.1.S1_at--657--7151Chr03:29279910..29279934 (25 bp)
GTCTCCCGACGGTTGATTGGTTGGA
LOC_Os03g51270
Os.37705.1.S1_at--630--971Chr03:29279844..29279868 (25 bp)
AGGAGTTTCAGGGTGTCCTCACTGT
LOC_Os03g51270
Os.37705.1.S1_at--668--10111Chr03:29279795..29279819 (25 bp)
TATGGTTTTTGACGTCAGCTCACTC
LOC_Os03g51270
Os.37705.1.S1_at--725--6331Chr03:29279767..29279791 (25 bp)
GATGCAGTCTTTGCCTTTGACTAAT
LOC_Os03g51270
Os.37705.1.S1_at--763--7931Chr03:29279701..29279725 (25 bp)
GGATTAGCACGCGTGATGTCCTCTC
LOC_Os03g51270
Os.37705.1.S1_at--858--8871Chr03:29279688..29279712 (25 bp)
TGATGTCCTCTCTGTGCAGCATGGT
LOC_Os03g51270
Os.37705.1.S1_at--1094--1511Chr03:29279671..29279695 (25 bp)
AGCATGGTCCTGCACTGTACCTGTA
LOC_Os03g51270
Os.37705.1.S1_at--88--7351Chr03:29279636..29279660 (25 bp)
GTGCAAGCACAAACGTTCCACGACA
LOC_Os03g51270
Target Sequence 
GAACTGGAACTGCACTTTCGCTTCTCTGATTTCGTCATCAGACAGGCGATCAGAGTGGATATGCTACCGTATCGGCATGA
CAAGCTCAAGAGGGTGGTCATGTCTGGAGCCTGTCATTGGCAGGGGCTGATCGAGCTAGCACACCACATTCGTCGTTGTG
CTAGTAGACTTGACTGTATGATCATGGATCCGATGGTTAGAATTAAGGGTCTCCCGACGGTTGATTGGTTGGAGGAAAGA
GGCCGCAGGATTGCCAAAGAGCTTCTTAAGAGGCAGGAGTTTCAGGGTGTCCTCACTGTTTTGTGAGATAAAGCCGCATG
AAATATGGTTTTTGACGTCAGCTCACTCCAAGATGCAGTCTTTGCCTTTGACTAATAATTTATTACAATAAATTGATGAA
ATCCAATAATTTGCAATGGATTAGCACGCGTGATGTCCTCTCTGTGCAGCATGGTCCTGCACTGTACCTGTACCGTGCAC
TCGTGCAAGCACAAACGTTCCACGACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37705.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis