Browse Element(s) Details


Os.37768.1.S1_at

Description gb:AK119704.1
DB_XREF= gi:37989327
TID=Os.37768.1
CNT=18
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.37768 (NCBI UniGene Cluster)
UG_TITLE=Rice mRNA for ribosomal protein L35 (NH77 gene), partial sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-157-E02, full insert sequence.
FL= gb:AK059262.1 gb:AK119704.1 gb:AK119701.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3005010/1160S ribosomal protein L35, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g29990NANA2+17816988..17817950retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g30000OsAffx.31869.1.S1_at9/112+17818280..17819395retrotransposon protein, putative, unclassified
LOC_Os02g30000OsAffx.31869.5.S1_x_at6/112+17818280..17819395retrotransposon protein, putative, unclassified
LOC_Os02g30000OsAffx.31869.4.S1_at2/112+17818280..17819395retrotransposon protein, putative, unclassified
LOC_Os02g30000OsAffx.31869.4.S1_x_at2/112+17818280..17819395retrotransposon protein, putative, unclassified
LOC_Os02g30000OsAffx.31869.2.S1_at1/112+17818280..17819395retrotransposon protein, putative, unclassified
LOC_Os02g30000OsAffx.31869.3.S1_s_at1/112+17818280..17819395retrotransposon protein, putative, unclassified
LOC_Os02g30010Os.53292.1.S1_at2/112+17823875..17826522transposon protein, putative, unclassified
LOC_Os02g30010Os.53292.1.S1_x_at1/112+17823875..17826522transposon protein, putative, unclassified
LOC_Os02g30010OsAffx.20733.1.A1_x_at1/112+17823875..17826522transposon protein, putative, unclassified
LOC_Os02g30020NANA2+17830216..17833146retrotransposon protein, putative, unclassified
LOC_Os02g30030OsAffx.22722.1.S1_at1/112+17834067..17835800retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g30040OsAffx.1646.1.S1_x_at1/112+17836562..17839492retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g30050Os.37768.1.S1_at10/112+17840425..1784202060S ribosomal protein L35, putative, expressed
LOC_Os02g30060OsAffx.24506.1.S1_at11/112+17842472..178466783-oxoacyl-reductase, chloroplast precursor, putative, expressed
LOC_Os02g30070OsAffx.24507.1.S1_at11/112+17853780..17854251expressed protein
LOC_Os02g30080OsAffx.24508.1.S1_at11/112+17856325..17861119Cytochrome P450 family protein, expressed
LOC_Os02g30090OsAffx.24508.2.S1_at10/112+17862035..17865321Cytochrome P450 family protein

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0007046biological_processribosome biogenesis
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37768.1.S1_at--340--2731NONE
AAGCACCAGCTTTCGCTGAAGACGG
NONE
Os.37768.1.S1_at--986--2831Chr02:17841786..17841810 (25 bp)
AAGTATGCCATCAAGGCGTAGGTCA
LOC_Os02g30050
Os.37768.1.S1_at--159--4311Chr02:17841793..17841817 (25 bp)
CCATCAAGGCGTAGGTCAGGGAACA
LOC_Os02g30050
Os.37768.1.S1_at--1066--8771Chr02:17841831..17841855 (25 bp)
TGTTTAGCACATCACTCAGTCAATT
LOC_Os02g30050
Os.37768.1.S1_at--570--9631Chr02:17841846..17841870 (25 bp)
TCAGTCAATTTATCTGCCCTCGAGT
LOC_Os02g30050
Os.37768.1.S1_at--214--9171Chr02:17841860..17841884 (25 bp)
TGCCCTCGAGTTCCTTGAATTTTGA
LOC_Os02g30050
Os.37768.1.S1_at--395--751Chr02:17841892..17841916 (25 bp)
ATGTATGGACATGCCTTGTGGTCAA
LOC_Os02g30050
Os.37768.1.S1_at--770--591Chr02:17841902..17841926 (25 bp)
ATGCCTTGTGGTCAAGTACAATGTG
LOC_Os02g30050
Os.37768.1.S1_at--280--6091Chr02:17841937..17841961 (25 bp)
GAGTACTTGCATGCTAACATTGATA
LOC_Os02g30050
Os.37768.1.S1_at--543--451Chr02:17841963..17841987 (25 bp)
ATCTAATCTCATATCGTCGTCTTCG
LOC_Os02g30050
Os.37768.1.S1_at--1054--10091Chr02:17841974..17841998 (25 bp)
TATCGTCGTCTTCGGTTAACTTGGT
LOC_Os02g30050
Target Sequence 
AAGCACCAGCTTTCGCTGAAGACGGAGAGGGAAAAGAAGCGCGAGAAGTATTTCCCCATGAGGAAGTATGCCATCAAGGC
GTAGGTCAGGGAACATGAGAGAATGTTATGTTTAGCACATCACTCAGTCAATTTATCTGCCCTCGAGTTCCTTGAATTTT
GATGTTATCATGTATGGACATGCCTTGTGGTCAAGTACAATGTGACGGGGGTTTGAGTACTTGCATGCTAACATTGATAT
ATCTAATCTCATATCGTCGTCTTCGGTTAACTTGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37768.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis